Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0554 and BT0555 are separated by 38 nucleotides BT0555 and BT0556 are separated by 27 nucleotides
BT0554: BT0554 - glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file), at 685,280 to 687,124
BT0554
BT0555: BT0555 - amidophosphoribosyltransferase (NCBI ptt file), at 687,163 to 689,046
BT0555
BT0556: BT0556 - carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file), at 689,074 to 690,240
BT0556
Position (kb) 687
688
689
690 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 686.182 kb on + strand, within BT0554 at 686.273 kb on + strand, within BT0554 at 686.567 kb on - strand, within BT0554 at 686.653 kb on + strand, within BT0554 at 686.693 kb on - strand, within BT0554 at 686.693 kb on - strand, within BT0554 at 686.847 kb on + strand, within BT0554 at 686.847 kb on + strand, within BT0554 at 686.848 kb on - strand, within BT0554 at 687.022 kb on + strand at 687.025 kb on + strand at 687.051 kb on - strand at 687.051 kb on - strand at 687.056 kb on - strand at 687.068 kb on - strand at 687.081 kb on + strand at 687.149 kb on + strand at 687.150 kb on - strand at 687.201 kb on - strand at 687.359 kb on - strand, within BT0555 at 687.359 kb on - strand, within BT0555 at 687.423 kb on + strand, within BT0555 at 687.500 kb on + strand, within BT0555 at 687.500 kb on + strand, within BT0555 at 687.501 kb on - strand, within BT0555 at 687.501 kb on - strand, within BT0555 at 687.502 kb on + strand, within BT0555 at 687.502 kb on + strand, within BT0555 at 687.503 kb on - strand, within BT0555 at 687.503 kb on - strand, within BT0555 at 687.526 kb on - strand, within BT0555 at 687.526 kb on - strand, within BT0555 at 687.554 kb on + strand, within BT0555 at 687.629 kb on + strand, within BT0555 at 687.676 kb on - strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.692 kb on - strand, within BT0555 at 687.798 kb on - strand, within BT0555 at 687.825 kb on - strand, within BT0555 at 687.953 kb on + strand, within BT0555 at 687.959 kb on + strand, within BT0555 at 688.149 kb on - strand, within BT0555 at 688.213 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.236 kb on - strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.475 kb on + strand, within BT0555 at 688.477 kb on + strand, within BT0555 at 688.537 kb on - strand, within BT0555 at 688.555 kb on - strand, within BT0555 at 688.616 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 688.816 kb on + strand, within BT0555 at 689.036 kb on - strand at 689.044 kb on + strand at 689.045 kb on - strand at 689.159 kb on + strand at 689.235 kb on + strand, within BT0556 at 689.235 kb on + strand, within BT0556 at 689.490 kb on + strand, within BT0556 at 689.566 kb on + strand, within BT0556 at 689.595 kb on - strand, within BT0556 at 689.623 kb on + strand, within BT0556 at 689.646 kb on + strand, within BT0556 at 689.872 kb on - strand, within BT0556 at 689.975 kb on - strand, within BT0556
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 686,182 + BT0554 0.49 +0.9 686,273 + BT0554 0.54 +0.2 686,567 - BT0554 0.70 -1.6 686,653 + BT0554 0.74 -1.8 686,693 - BT0554 0.77 -1.9 686,693 - BT0554 0.77 +0.0 686,847 + BT0554 0.85 -2.5 686,847 + BT0554 0.85 +2.6 686,848 - BT0554 0.85 -2.3 687,022 + -1.1 687,025 + +0.2 687,051 - -2.3 687,051 - -1.8 687,056 - -3.2 687,068 - -0.8 687,081 + -1.9 687,149 + -2.1 687,150 - -1.1 687,201 - -0.8 687,359 - BT0555 0.10 +0.2 687,359 - BT0555 0.10 -1.6 687,423 + BT0555 0.14 -2.2 687,500 + BT0555 0.18 -2.3 687,500 + BT0555 0.18 -3.3 687,501 - BT0555 0.18 -1.9 687,501 - BT0555 0.18 -1.3 687,502 + BT0555 0.18 -1.8 687,502 + BT0555 0.18 -2.3 687,503 - BT0555 0.18 -2.5 687,503 - BT0555 0.18 -2.5 687,526 - BT0555 0.19 -3.0 687,526 - BT0555 0.19 -1.1 687,554 + BT0555 0.21 -2.9 687,629 + BT0555 0.25 -4.0 687,676 - BT0555 0.27 -0.3 687,691 + BT0555 0.28 -1.1 687,691 + BT0555 0.28 -1.6 687,691 + BT0555 0.28 -2.6 687,692 - BT0555 0.28 -1.3 687,798 - BT0555 0.34 -4.3 687,825 - BT0555 0.35 -4.6 687,953 + BT0555 0.42 -3.3 687,959 + BT0555 0.42 -2.8 688,149 - BT0555 0.52 -2.3 688,213 - BT0555 0.56 -3.3 688,236 - BT0555 0.57 -3.1 688,236 - BT0555 0.57 -2.8 688,475 + BT0555 0.70 -3.1 688,475 + BT0555 0.70 -3.4 688,475 + BT0555 0.70 -2.7 688,477 + BT0555 0.70 -1.3 688,537 - BT0555 0.73 -3.1 688,555 - BT0555 0.74 -3.1 688,616 + BT0555 0.77 -1.3 688,816 + BT0555 0.88 -0.8 688,816 + BT0555 0.88 -2.2 688,816 + BT0555 0.88 -3.7 688,816 + BT0555 0.88 -3.7 689,036 - -2.3 689,044 + -0.7 689,045 - -4.9 689,159 + -0.8 689,235 + BT0556 0.14 -1.1 689,235 + BT0556 0.14 +0.2 689,490 + BT0556 0.36 -3.3 689,566 + BT0556 0.42 -3.7 689,595 - BT0556 0.45 -1.8 689,623 + BT0556 0.47 -3.1 689,646 + BT0556 0.49 -1.3 689,872 - BT0556 0.68 -1.3 689,975 - BT0556 0.77 -1.3
Or see this region's nucleotide sequence