Experiment: Post-colonization (Day 14) - Cage2;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0155 and BT0156 are separated by 29 nucleotides BT0156 and BT0157 are separated by 85 nucleotides BT0157 and BT0158 are separated by 67 nucleotides
BT0155: BT0155 - putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file), at 160,649 to 161,716
BT0155
BT0156: BT0156 - transcriptional regulator (NCBI ptt file), at 161,746 to 162,408
BT0156
BT0157: BT0157 - hypothetical protein (NCBI ptt file), at 162,494 to 163,084
BT0157
BT0158: BT0158 - Na(+)/H(+) antiporter (NCBI ptt file), at 163,152 to 164,579
BT0158
Position (kb) 161
162
163 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 160.772 kb on - strand, within BT0155 at 160.823 kb on - strand, within BT0155 at 160.859 kb on - strand, within BT0155 at 160.865 kb on + strand, within BT0155 at 160.897 kb on + strand, within BT0155 at 160.997 kb on - strand, within BT0155 at 161.105 kb on + strand, within BT0155 at 161.105 kb on + strand, within BT0155 at 161.160 kb on + strand, within BT0155 at 161.160 kb on + strand, within BT0155 at 161.243 kb on + strand, within BT0155 at 161.244 kb on - strand, within BT0155 at 161.292 kb on + strand, within BT0155 at 161.345 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.533 kb on - strand, within BT0155 at 161.533 kb on - strand, within BT0155 at 161.536 kb on + strand, within BT0155 at 161.540 kb on - strand, within BT0155 at 161.616 kb on + strand at 161.686 kb on - strand at 161.707 kb on - strand at 161.753 kb on + strand at 161.793 kb on - strand at 161.863 kb on - strand, within BT0156 at 161.891 kb on - strand, within BT0156 at 162.035 kb on + strand, within BT0156 at 162.118 kb on - strand, within BT0156 at 162.243 kb on + strand, within BT0156 at 162.246 kb on - strand, within BT0156 at 162.328 kb on + strand, within BT0156 at 162.328 kb on + strand, within BT0156 at 162.384 kb on + strand at 162.397 kb on - strand at 162.398 kb on + strand at 162.477 kb on - strand at 162.477 kb on - strand at 162.478 kb on + strand at 162.478 kb on + strand at 162.586 kb on + strand, within BT0157 at 162.587 kb on - strand, within BT0157 at 162.591 kb on - strand, within BT0157 at 162.620 kb on - strand, within BT0157 at 162.620 kb on - strand, within BT0157 at 162.623 kb on - strand, within BT0157 at 162.719 kb on - strand, within BT0157 at 162.936 kb on - strand, within BT0157 at 163.055 kb on + strand at 163.056 kb on - strand at 163.056 kb on - strand at 163.269 kb on - strand at 163.305 kb on + strand, within BT0158 at 163.305 kb on + strand, within BT0158
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage2;Mouse2 remove 160,772 - BT0155 0.12 -2.0 160,823 - BT0155 0.16 -1.7 160,859 - BT0155 0.20 -2.7 160,865 + BT0155 0.20 -7.6 160,897 + BT0155 0.23 -1.7 160,997 - BT0155 0.33 -2.3 161,105 + BT0155 0.43 -4.4 161,105 + BT0155 0.43 -1.7 161,160 + BT0155 0.48 -1.9 161,160 + BT0155 0.48 -2.6 161,243 + BT0155 0.56 -1.3 161,244 - BT0155 0.56 -2.1 161,292 + BT0155 0.60 -3.1 161,345 - BT0155 0.65 -1.0 161,427 - BT0155 0.73 -2.8 161,427 - BT0155 0.73 -2.0 161,427 - BT0155 0.73 -2.9 161,533 - BT0155 0.83 -1.9 161,533 - BT0155 0.83 -2.4 161,536 + BT0155 0.83 -1.5 161,540 - BT0155 0.83 -2.9 161,616 + -1.3 161,686 - -1.9 161,707 - -3.0 161,753 + +0.1 161,793 - -1.7 161,863 - BT0156 0.18 -1.7 161,891 - BT0156 0.22 -1.5 162,035 + BT0156 0.44 -3.3 162,118 - BT0156 0.56 -1.3 162,243 + BT0156 0.75 -2.6 162,246 - BT0156 0.75 -3.0 162,328 + BT0156 0.88 -1.5 162,328 + BT0156 0.88 -1.7 162,384 + -1.7 162,397 - -3.0 162,398 + -4.1 162,477 - +1.3 162,477 - -1.5 162,478 + -2.4 162,478 + -0.7 162,586 + BT0157 0.16 +0.2 162,587 - BT0157 0.16 -1.9 162,591 - BT0157 0.16 -1.3 162,620 - BT0157 0.21 -0.0 162,620 - BT0157 0.21 -0.3 162,623 - BT0157 0.22 +0.1 162,719 - BT0157 0.38 -2.7 162,936 - BT0157 0.75 +0.7 163,055 + -0.7 163,056 - -1.3 163,056 - -0.7 163,269 - -2.4 163,305 + BT0158 0.11 -2.1 163,305 + BT0158 0.11 +0.7
Or see this region's nucleotide sequence