Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_35

Experiment: Post-colonization (Day 14) - Cage2;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 14) - Cage2;Mouse2
27,922	+		p5482_33	0.73	-0.1
27,922	+		p5482_33	0.73	+0.3
27,922	+		p5482_33	0.73	-2.2
27,934	-		p5482_33	0.74	+0.8
27,934	-		p5482_33	0.74	+0.5
27,934	-		p5482_33	0.74	-1.5
27,969	+		p5482_33	0.79	+0.6
27,969	+		p5482_33	0.79	-0.2
27,969	+		p5482_33	0.79	-1.1
27,969	+		p5482_33	0.79	+2.2
27,969	+		p5482_33	0.79	-0.5
27,970	-		p5482_33	0.79	-1.5
27,970	-		p5482_33	0.79	-0.7
27,970	-		p5482_33	0.79	+0.9
27,970	-		p5482_33	0.79	-0.2
27,987	+		p5482_33	0.81	-1.5
27,988	-		p5482_33	0.81	-1.1
28,051	+		p5482_33	0.88	-0.9
28,051	+		p5482_33	0.88	-0.1
28,051	+		p5482_33	0.88	+0.3
28,052	-		p5482_33	0.89	+0.4
28,052	-		p5482_33	0.89	-1.8
28,052	-		p5482_33	0.89	+0.6
28,052	-		p5482_33	0.89	+0.6
28,071	-				-1.3
28,131	-				-2.2
28,131	-				-0.7
28,142	+				+1.1
28,143	-				-0.9
28,143	-				-0.7
28,143	-				-1.8
28,144	+				-0.3
28,144	+				-2.4
28,144	+				+0.9
28,144	+				+0.6
28,144	+				-0.5
28,145	-				+0.0
28,145	-				-1.9
28,147	+				-1.8
28,147	+				-1.2
28,148	-				+0.3
28,148	-				-0.0
28,148	-				-0.7
28,148	-				-0.5
28,159	+				+0.9
28,175	+				-1.2
28,175	+				-0.9
28,175	+				+0.3
28,175	+				+0.9
28,176	-				-0.5
28,185	+				-0.7
28,186	-				-0.6
28,186	-				-0.1
28,186	-				+0.3
28,186	-				-0.5
28,260	-		p5482_34	0.16	-1.0
28,291	-		p5482_34	0.21	+0.1
28,344	-		p5482_34	0.29	-0.5
28,373	-		p5482_34	0.33	-1.6
28,422	+		p5482_34	0.41	-1.0
28,422	+		p5482_34	0.41	-3.1
28,423	-		p5482_34	0.41	-0.9
28,423	-		p5482_34	0.41	-0.2
28,425	+		p5482_34	0.41	-1.1
28,425	+		p5482_34	0.41	-2.6
28,426	-		p5482_34	0.42	-1.5
28,426	-		p5482_34	0.42	-2.7
28,426	-		p5482_34	0.42	-0.9
28,454	-		p5482_34	0.46	-0.9
28,466	+		p5482_34	0.48	-0.3
28,466	+		p5482_34	0.48	-0.9
28,466	+		p5482_34	0.48	+0.3
28,467	-		p5482_34	0.48	-1.1
28,467	-		p5482_34	0.48	-1.2
28,467	-		p5482_34	0.48	-0.7
28,467	-		p5482_34	0.48	-0.9
28,467	-		p5482_34	0.48	-1.6
28,467	-		p5482_34	0.48	+1.3
28,467	-		p5482_34	0.48	-1.1
28,467	-		p5482_34	0.48	-1.4
28,495	-		p5482_34	0.52	-0.2
28,512	+		p5482_34	0.55	-1.6
28,534	+		p5482_34	0.59	-1.2
28,535	-		p5482_34	0.59	+0.1
28,535	-		p5482_34	0.59	-0.9
28,538	-		p5482_34	0.59	-2.2
28,538	-		p5482_34	0.59	-1.3
28,542	+		p5482_34	0.60	+0.3
28,542	+		p5482_34	0.60	-0.8
28,592	-		p5482_34	0.68	-1.0
28,592	-		p5482_34	0.68	-1.4
28,610	+		p5482_34	0.70	-0.9
28,611	-		p5482_34	0.71	+0.7
28,611	-		p5482_34	0.71	-0.7
28,716	-		p5482_34	0.87	-1.5
28,764	+				-1.2
28,764	+				-1.4
28,765	-				-1.5
28,789	+				-0.0
28,789	+				-0.7
28,789	+				-0.7
28,793	-				-0.1
28,793	-				-1.2
28,812	+				-0.4
28,888	-				-1.2
28,946	-				+0.1
28,999	+				+0.2
29,000	-				+0.7
29,050	+				-0.7
29,051	-				-0.7
29,064	+		p5482_35	0.11	-1.2
29,064	+		p5482_35	0.11	-1.0
29,064	+		p5482_35	0.11	+0.9
29,065	-		p5482_35	0.11	-1.1
29,065	-		p5482_35	0.11	+0.3
29,066	+		p5482_35	0.11	+0.2
29,066	+		p5482_35	0.11	-0.2
29,067	-		p5482_35	0.11	+0.6
29,109	+		p5482_35	0.14	-0.1
29,110	-		p5482_35	0.14	+0.1
29,129	+		p5482_35	0.15	+2.5
29,130	-		p5482_35	0.15	-0.5
29,130	-		p5482_35	0.15	-0.3
29,139	+		p5482_35	0.16	-0.2
29,140	-		p5482_35	0.16	-1.3
29,200	-		p5482_35	0.20	-0.1
29,277	+		p5482_35	0.25	+1.3
29,277	+		p5482_35	0.25	-0.3
29,277	+		p5482_35	0.25	-0.1
29,277	+		p5482_35	0.25	+0.9
29,277	+		p5482_35	0.25	-0.7
29,277	+		p5482_35	0.25	+0.9
29,277	+		p5482_35	0.25	-0.8
29,277	+		p5482_35	0.25	+0.9
29,277	+		p5482_35	0.25	-0.1
29,277	+		p5482_35	0.25	-0.9
29,277	+		p5482_35	0.25	-0.2
29,278	-		p5482_35	0.25	-1.2
29,278	-		p5482_35	0.25	+0.3
29,278	-		p5482_35	0.25	+0.7
29,278	-		p5482_35	0.25	-1.9
29,278	-		p5482_35	0.25	+0.3
29,278	-		p5482_35	0.25	-0.6
29,278	-		p5482_35	0.25	+0.3
29,278	-		p5482_35	0.25	-0.6
29,278	-		p5482_35	0.25	-1.4
29,327	+		p5482_35	0.28	-0.8
29,327	+		p5482_35	0.28	-0.1
29,327	+		p5482_35	0.28	+0.1
29,328	-		p5482_35	0.28	-2.2
29,328	-		p5482_35	0.28	-0.6
29,348	+		p5482_35	0.30	+0.6
29,348	+		p5482_35	0.30	-1.0
29,349	-		p5482_35	0.30	-0.6
29,349	-		p5482_35	0.30	+0.3
29,377	+		p5482_35	0.31	-1.1
29,377	+		p5482_35	0.31	+0.3
29,377	+		p5482_35	0.31	-0.4
29,377	+		p5482_35	0.31	-0.7
29,378	-		p5482_35	0.32	-0.7
29,378	-		p5482_35	0.32	-0.5
29,379	+		p5482_35	0.32	+0.6
29,379	+		p5482_35	0.32	-0.7
29,379	+		p5482_35	0.32	-1.1
29,379	+		p5482_35	0.32	+0.6
29,380	-		p5482_35	0.32	-0.2
29,380	-		p5482_35	0.32	-2.2
29,380	-		p5482_35	0.32	+0.5
29,380	-		p5482_35	0.32	-0.3
29,381	+		p5482_35	0.32	-0.3
29,381	+		p5482_35	0.32	-2.8
29,381	+		p5482_35	0.32	-0.2
29,381	+		p5482_35	0.32	+0.2
29,381	+		p5482_35	0.32	-1.1
29,382	-		p5482_35	0.32	-0.1
29,382	-		p5482_35	0.32	-0.6
29,382	-		p5482_35	0.32	+0.4
29,394	+		p5482_35	0.33	+1.5
29,440	+		p5482_35	0.36	-1.1
29,456	+		p5482_35	0.37	+0.2
29,458	+		p5482_35	0.37	+1.4
29,458	+		p5482_35	0.37	+0.4
29,458	+		p5482_35	0.37	+0.5
29,459	-		p5482_35	0.37	-0.5
29,459	-		p5482_35	0.37	+0.9
29,461	+		p5482_35	0.37	-0.2
29,462	-		p5482_35	0.37	-1.4
29,507	-		p5482_35	0.40	-0.1
29,581	-		p5482_35	0.45	-1.2
29,634	+		p5482_35	0.49	+0.9
29,634	+		p5482_35	0.49	-0.3
29,635	-		p5482_35	0.49	-0.7
29,649	+		p5482_35	0.50	-0.7
29,650	-		p5482_35	0.50	-1.2
29,691	-		p5482_35	0.52	+0.9
29,698	+		p5482_35	0.53	-1.7
29,698	+		p5482_35	0.53	-1.0
29,698	+		p5482_35	0.53	-0.9
29,699	-		p5482_35	0.53	-1.0
29,699	-		p5482_35	0.53	-1.5
29,745	+		p5482_35	0.56	-0.7
29,746	-		p5482_35	0.56	-1.1
29,746	-		p5482_35	0.56	+0.5
29,769	+		p5482_35	0.57	+0.0
29,808	+		p5482_35	0.60	+1.3
29,810	+		p5482_35	0.60	+0.6
29,810	+		p5482_35	0.60	-2.4
29,810	+		p5482_35	0.60	-0.8
29,811	-		p5482_35	0.60	-2.2
29,873	+		p5482_35	0.64	+0.2
29,873	+		p5482_35	0.64	-0.0
29,873	+		p5482_35	0.64	+0.3
29,873	+		p5482_35	0.64	-1.3
29,873	+		p5482_35	0.64	+0.5
29,874	-		p5482_35	0.64	-2.1
29,874	-		p5482_35	0.64	-0.3
29,882	+		p5482_35	0.65	+1.5
29,907	+		p5482_35	0.67	-2.1
29,910	+		p5482_35	0.67	-1.4
29,910	+		p5482_35	0.67	+2.8
29,950	+		p5482_35	0.69	-0.1
29,950	+		p5482_35	0.69	+0.7
29,950	+		p5482_35	0.69	-0.3
29,951	-		p5482_35	0.70	-1.0
30,003	+		p5482_35	0.73	-2.8
30,004	-		p5482_35	0.73	-1.2
30,004	-		p5482_35	0.73	-1.0
30,004	-		p5482_35	0.73	+2.5
30,004	-		p5482_35	0.73	-0.7
30,005	+		p5482_35	0.73	+0.2
30,006	-		p5482_35	0.73	-1.3
30,006	-		p5482_35	0.73	-0.7
30,006	-		p5482_35	0.73	+0.2
30,029	+		p5482_35	0.75	+0.2
30,066	+		p5482_35	0.77	+2.9
30,066	+		p5482_35	0.77	+0.1
30,071	+		p5482_35	0.77	+0.9
30,084	+		p5482_35	0.78	+0.3
30,084	+		p5482_35	0.78	-1.3
30,084	+		p5482_35	0.78	-1.1
30,084	+		p5482_35	0.78	-0.9
30,084	+		p5482_35	0.78	-0.2
30,085	-		p5482_35	0.78	+0.0
30,085	-		p5482_35	0.78	-2.8
30,085	-		p5482_35	0.78	-1.0
30,085	-		p5482_35	0.78	-0.3
30,086	+		p5482_35	0.78	-1.1
30,087	-		p5482_35	0.79	-0.5
30,087	-		p5482_35	0.79	-1.2
30,087	-		p5482_35	0.79	-3.4
30,089	-		p5482_35	0.79	-1.0
30,089	-		p5482_35	0.79	-0.1
30,089	-		p5482_35	0.79	-1.2
30,104	+		p5482_35	0.80	-0.6
30,104	+		p5482_35	0.80	+0.5
30,105	-		p5482_35	0.80	+0.1
30,105	-		p5482_35	0.80	-0.2
30,105	-		p5482_35	0.80	-1.9
30,105	-		p5482_35	0.80	-0.5
30,105	-		p5482_35	0.80	+0.8
30,138	-		p5482_35	0.82	-1.1
30,138	-		p5482_35	0.82	+0.5
30,216	+		p5482_35	0.87	+0.1
30,216	+		p5482_35	0.87	+0.3
30,216	+		p5482_35	0.87	-1.1
30,216	+		p5482_35	0.87	+0.2
30,217	-		p5482_35	0.87	-0.0
30,217	-		p5482_35	0.87	-0.1
30,217	-		p5482_35	0.87	-1.1
30,217	-		p5482_35	0.87	-1.2
30,218	+		p5482_35	0.87	+0.2
30,218	+		p5482_35	0.87	+1.2
30,219	-		p5482_35	0.87	-1.3
30,219	-		p5482_35	0.87	+0.0
30,219	-		p5482_35	0.87	-0.7
30,219	-		p5482_35	0.87	-2.1
30,228	+		p5482_35	0.88	-1.1
30,228	+		p5482_35	0.88	-2.0
30,228	+		p5482_35	0.88	+0.3
30,229	-		p5482_35	0.88	+0.8
30,229	-		p5482_35	0.88	+1.6
30,229	-		p5482_35	0.88	+0.0
30,229	-		p5482_35	0.88	-0.9
30,230	+		p5482_35	0.88	+0.7
30,231	-		p5482_35	0.88	-0.5
30,231	-		p5482_35	0.88	-0.5
30,231	-		p5482_35	0.88	-1.5
30,231	-		p5482_35	0.88	-0.4
30,291	+				-1.1
30,292	-				+1.2
30,292	-				-0.1
30,292	-				+0.9
30,293	+				-0.4
30,320	+				-1.0
30,321	-				-0.7
30,332	+				+0.3
30,332	+				-0.7
30,332	+				-0.1
30,333	-				+0.1
30,333	-				-1.0
30,333	-				-0.5
30,333	-				-1.1
30,380	+				+0.0
30,389	-				-1.2
30,414	+				-0.4
30,415	-				-1.3
30,415	-				-1.2
30,418	+				-0.5
30,418	+				+0.5
30,419	-				-0.5
30,420	+				-0.4
30,420	+				-1.1
30,421	-				+0.9
30,423	+				-0.7
30,432	+				-0.2
30,433	-				-0.7
30,450	+				-2.0
30,524	+		p5482_36	0.23	-0.5
30,524	+		p5482_36	0.23	+0.4
30,525	-		p5482_36	0.23	+0.3
30,525	-		p5482_36	0.23	+0.9
30,526	+		p5482_36	0.23	-0.5
30,532	+		p5482_36	0.25	-0.4
30,532	+		p5482_36	0.25	-0.2
30,533	-		p5482_36	0.25	-0.3
30,533	-		p5482_36	0.25	-0.1
30,562	+		p5482_36	0.32	-0.9
30,562	+		p5482_36	0.32	-1.8
30,563	-		p5482_36	0.33	-0.6
30,589	-		p5482_36	0.39	-1.1
30,607	-		p5482_36	0.44	-0.1
30,663	-		p5482_36	0.58	-1.5
30,672	+		p5482_36	0.60	+0.9
30,673	-		p5482_36	0.60	-2.4
30,673	-		p5482_36	0.60	-0.7
30,687	+		p5482_36	0.64	-0.3
30,687	+		p5482_36	0.64	-0.1
30,753	+		p5482_36	0.80	+0.0
30,754	-		p5482_36	0.80	+0.3
30,754	-		p5482_36	0.80	+0.4
30,790	-		p5482_36	0.89	-0.7
30,817	+				-0.7
30,817	+				-1.3
30,817	+				-1.6
30,817	+				+0.8
30,818	-				-2.5
30,818	-				-0.8
30,818	-				-0.3
30,827	+				-2.9
30,827	+				-0.7
30,828	-				-0.4
30,828	-				+0.3
30,828	-				-0.4
30,840	+				-0.5
30,840	+				-0.2
30,840	+				-0.2
30,841	-				-2.7
30,841	-				-0.2
30,841	-				-0.6
30,842	+				-0.6
30,842	+				-0.5
30,842	+				-0.2
30,843	-				-2.0
30,843	-				-0.3
30,843	-				-0.8
30,843	-				-0.1
30,844	+				-0.8
30,845	-				-1.9
30,845	-				-0.3
30,893	-				+1.9
30,904	-				+0.1
30,905	+				-0.3
30,905	+				-0.7
30,905	+				+0.3
30,906	-				+0.2
30,911	+				-2.4
30,912	+				-0.1
30,912	+				+0.2
30,912	+				-1.4
30,912	+				-0.3
30,912	+				-1.0
30,912	+				+0.9
30,913	-				-1.3
30,913	-				+0.1
30,913	-				-0.4
30,913	-				-0.4
30,913	-				-1.4
30,913	-				-0.7
30,913	-				+0.1
30,914	+				-0.6
30,914	+				-1.1
30,914	+				-2.5
30,914	+				-0.1
30,915	-				-0.6
30,915	-				-3.9
30,925	+				+0.4
30,925	+				+0.5
30,926	-				-1.8
30,926	-				-0.2
30,926	-				-1.6
30,967	+				-1.0
30,968	-				+0.5
31,014	-				-1.3
31,018	+				-1.7
31,022	-				-0.0
31,024	+				-0.4
31,024	+				-1.1
31,025	-				-0.3
31,134	+		p5482_37	0.32	-1.7
31,134	+		p5482_37	0.32	-2.1
31,135	-		p5482_37	0.32	-1.1
31,135	-		p5482_37	0.32	+0.6
31,153	-		p5482_37	0.37	+0.7
31,158	-		p5482_37	0.38	-0.7
31,158	-		p5482_37	0.38	-1.4
31,158	-		p5482_37	0.38	+0.3
31,163	-		p5482_37	0.39	-1.1
31,300	+		p5482_37	0.75	-0.5
31,301	-		p5482_37	0.75	-1.3