Experiment: Post-colonization (Day 12) - Cage5;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0291 and BT0292 are separated by 391 nucleotides BT0292 and BT0293 are separated by 4 nucleotides
BT0291: BT0291 - integrase (NCBI ptt file), at 339,758 to 340,723
BT0291
BT0292: BT0292 - conserved hypothetical protein (NCBI ptt file), at 341,115 to 341,864
BT0292
BT0293: BT0293 - hypothetical protein (NCBI ptt file), at 341,869 to 343,101
BT0293
Position (kb) 341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.201 kb on + strand, within BT0291 at 340.303 kb on - strand, within BT0291 at 340.373 kb on + strand, within BT0291 at 340.377 kb on + strand, within BT0291 at 340.514 kb on + strand, within BT0291 at 340.966 kb on - strand at 341.024 kb on - strand at 341.031 kb on - strand at 341.102 kb on - strand at 341.102 kb on - strand at 341.106 kb on - strand at 341.162 kb on - strand at 341.334 kb on - strand, within BT0292 at 341.343 kb on - strand, within BT0292 at 341.425 kb on - strand, within BT0292 at 341.425 kb on - strand, within BT0292 at 341.425 kb on - strand, within BT0292 at 341.425 kb on - strand, within BT0292 at 341.466 kb on - strand, within BT0292 at 341.516 kb on - strand, within BT0292 at 341.581 kb on + strand, within BT0292 at 341.625 kb on - strand, within BT0292 at 341.638 kb on - strand, within BT0292 at 341.850 kb on - strand at 341.883 kb on + strand at 341.886 kb on + strand at 341.891 kb on + strand at 341.892 kb on - strand at 341.896 kb on - strand at 342.033 kb on - strand, within BT0293 at 342.035 kb on - strand, within BT0293 at 342.037 kb on - strand, within BT0293 at 342.047 kb on - strand, within BT0293 at 342.055 kb on - strand, within BT0293 at 342.056 kb on + strand, within BT0293 at 342.334 kb on - strand, within BT0293 at 342.355 kb on - strand, within BT0293 at 342.355 kb on - strand, within BT0293 at 342.631 kb on - strand, within BT0293 at 342.733 kb on - strand, within BT0293 at 342.767 kb on - strand, within BT0293 at 342.815 kb on - strand, within BT0293 at 342.839 kb on - strand, within BT0293
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage5;Mouse3 remove 340,201 + BT0291 0.46 -0.5 340,303 - BT0291 0.56 -2.4 340,373 + BT0291 0.64 -0.9 340,377 + BT0291 0.64 +1.5 340,514 + BT0291 0.78 -1.1 340,966 - +2.5 341,024 - -1.1 341,031 - -0.1 341,102 - -2.3 341,102 - -1.3 341,106 - +0.5 341,162 - -2.2 341,334 - BT0292 0.29 -2.1 341,343 - BT0292 0.30 +0.9 341,425 - BT0292 0.41 +1.7 341,425 - BT0292 0.41 +0.5 341,425 - BT0292 0.41 -0.8 341,425 - BT0292 0.41 -0.4 341,466 - BT0292 0.47 +0.9 341,516 - BT0292 0.53 +0.5 341,581 + BT0292 0.62 -1.1 341,625 - BT0292 0.68 -0.5 341,638 - BT0292 0.70 -0.4 341,850 - -1.9 341,883 + +0.5 341,886 + -1.1 341,891 + -1.7 341,892 - -1.1 341,896 - -0.3 342,033 - BT0293 0.13 -1.9 342,035 - BT0293 0.13 -2.6 342,037 - BT0293 0.14 -2.0 342,047 - BT0293 0.14 -1.5 342,055 - BT0293 0.15 +1.5 342,056 + BT0293 0.15 -0.1 342,334 - BT0293 0.38 -1.2 342,355 - BT0293 0.39 -1.0 342,355 - BT0293 0.39 +0.3 342,631 - BT0293 0.62 +0.5 342,733 - BT0293 0.70 -0.1 342,767 - BT0293 0.73 +0.3 342,815 - BT0293 0.77 -0.5 342,839 - BT0293 0.79 -0.3
Or see this region's nucleotide sequence