Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3516

Experiment: Post-colonization (Day 10) - Cage6;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 10) - Cage6;Mouse2
4,538,798	+		BT3515	0.26	-1.5
4,538,799	-		BT3515	0.26	-1.6
4,538,839	-		BT3515	0.29	-2.8
4,538,839	-		BT3515	0.29	-3.5
4,538,924	+		BT3515	0.36	-1.7
4,538,925	-		BT3515	0.36	-1.8
4,538,925	-		BT3515	0.36	-1.3
4,538,925	-		BT3515	0.36	-0.0
4,538,930	+		BT3515	0.37	-0.8
4,538,938	-		BT3515	0.38	-0.5
4,539,041	-		BT3515	0.46	-3.5
4,539,052	-		BT3515	0.47	-2.0
4,539,055	+		BT3515	0.48	-0.0
4,539,101	+		BT3515	0.52	-0.8
4,539,101	+		BT3515	0.52	-0.0
4,539,102	-		BT3515	0.52	-3.0
4,539,106	+		BT3515	0.52	-1.0
4,539,107	-		BT3515	0.52	-0.5
4,539,163	+		BT3515	0.57	-1.3
4,539,163	+		BT3515	0.57	-1.4
4,539,164	-		BT3515	0.57	-3.2
4,539,173	+		BT3515	0.58	-0.0
4,539,253	+		BT3515	0.65	-1.7
4,539,277	-		BT3515	0.67	-2.2
4,539,281	-		BT3515	0.67	-0.5
4,539,282	+		BT3515	0.67	-0.0
4,539,293	-		BT3515	0.68	-1.6
4,539,297	-		BT3515	0.68	-2.2
4,539,327	+		BT3515	0.71	-0.3
4,539,327	+		BT3515	0.71	-1.4
4,539,327	+		BT3515	0.71	-3.7
4,539,328	-		BT3515	0.71	-1.5
4,539,328	-		BT3515	0.71	+1.5
4,539,356	+		BT3515	0.73	-1.1
4,539,356	+		BT3515	0.73	-2.2
4,539,356	+		BT3515	0.73	-2.5
4,539,356	+		BT3515	0.73	-1.3
4,539,356	+		BT3515	0.73	+1.1
4,539,357	-		BT3515	0.73	-2.9
4,539,357	-		BT3515	0.73	-1.0
4,539,357	-		BT3515	0.73	-0.8
4,539,357	-		BT3515	0.73	-0.5
4,539,390	-		BT3515	0.76	-1.3
4,539,390	-		BT3515	0.76	-1.3
4,539,410	+		BT3515	0.78	-0.0
4,539,411	-		BT3515	0.78	+2.5
4,539,411	-		BT3515	0.78	-2.0
4,539,437	-		BT3515	0.80	-1.7
4,539,439	-		BT3515	0.80	-0.0
4,539,505	-		BT3515	0.86	-1.8
4,539,550	+		BT3515	0.90	-1.3
4,539,551	-				-2.6
4,539,573	-				-1.0
4,539,580	+				-0.4
4,539,630	-				-1.0
4,539,649	+				-2.0
4,539,661	-				-1.7
4,539,774	+				+0.5
4,539,775	-				-1.8
4,539,775	-				-2.3
4,539,824	-				-0.3
4,539,827	+				-2.0
4,539,828	-				-0.0
4,539,828	-				-1.0
4,539,829	+				-0.8
4,539,870	-				-0.3
4,539,870	-				-0.8
4,539,891	+				+1.2
4,539,936	+				-0.0
4,539,936	+				-0.3
4,539,942	-				-0.4
4,539,945	+				+0.8
4,539,958	-				+0.5
4,540,003	+		BT3516	0.12	-0.0
4,540,028	-		BT3516	0.13	-1.0
4,540,044	-		BT3516	0.14	-0.8
4,540,092	-		BT3516	0.16	-2.2
4,540,169	-		BT3516	0.20	-0.5
4,540,232	-		BT3516	0.24	-0.4
4,540,232	-		BT3516	0.24	-1.3
4,540,265	+		BT3516	0.25	-1.0
4,540,287	+		BT3516	0.27	-0.3
4,540,288	-		BT3516	0.27	-0.5
4,540,293	+		BT3516	0.27	-1.1
4,540,293	+		BT3516	0.27	+0.5
4,540,294	-		BT3516	0.27	-1.8
4,540,294	-		BT3516	0.27	+0.2
4,540,296	+		BT3516	0.27	+0.2
4,540,296	+		BT3516	0.27	-2.5
4,540,297	-		BT3516	0.27	-0.5
4,540,316	+		BT3516	0.28	+0.4
4,540,316	+		BT3516	0.28	-2.5
4,540,316	+		BT3516	0.28	-0.0
4,540,316	+		BT3516	0.28	-2.5
4,540,317	-		BT3516	0.28	-2.4
4,540,317	-		BT3516	0.28	+0.1
4,540,317	-		BT3516	0.28	+2.1
4,540,319	+		BT3516	0.28	-1.6
4,540,373	+		BT3516	0.31	-1.0
4,540,374	-		BT3516	0.31	+0.1
4,540,374	-		BT3516	0.31	-1.5
4,540,377	+		BT3516	0.31	+0.7
4,540,377	+		BT3516	0.31	-0.4
4,540,401	+		BT3516	0.33	-0.8
4,540,431	-		BT3516	0.34	-1.2
4,540,448	+		BT3516	0.35	-0.4
4,540,449	-		BT3516	0.35	-0.7
4,540,483	-		BT3516	0.37	-0.8
4,540,485	-		BT3516	0.37	-1.3
4,540,489	+		BT3516	0.37	+0.2
4,540,490	-		BT3516	0.37	-0.4
4,540,494	+		BT3516	0.37	-0.3
4,540,495	-		BT3516	0.38	-0.0
4,540,559	+		BT3516	0.41	-0.5
4,540,559	+		BT3516	0.41	+0.3
4,540,560	-		BT3516	0.41	-1.3
4,540,560	-		BT3516	0.41	+1.1
4,540,562	+		BT3516	0.41	+0.8
4,540,563	-		BT3516	0.41	+1.8
4,540,563	-		BT3516	0.41	+0.4
4,540,564	+		BT3516	0.41	-0.2
4,540,564	+		BT3516	0.41	-1.0
4,540,564	+		BT3516	0.41	+0.5
4,540,565	-		BT3516	0.41	-0.8
4,540,565	-		BT3516	0.41	+0.5
4,540,591	+		BT3516	0.43	-0.7
4,540,596	-		BT3516	0.43	-0.2
4,540,596	-		BT3516	0.43	-0.2
4,540,621	-		BT3516	0.44	-0.1
4,540,621	-		BT3516	0.44	-0.5
4,540,621	-		BT3516	0.44	-0.8
4,540,680	-		BT3516	0.47	-2.2
4,540,698	-		BT3516	0.48	+0.9
4,540,700	+		BT3516	0.48	+0.5
4,540,715	-		BT3516	0.49	-2.2
4,540,728	-		BT3516	0.50	-0.0
4,540,745	-		BT3516	0.51	-1.0
4,540,786	-		BT3516	0.53	+1.5
4,540,790	+		BT3516	0.53	-0.0
4,540,790	+		BT3516	0.53	-0.0
4,540,790	+		BT3516	0.53	-1.6
4,540,790	+		BT3516	0.53	-0.6
4,540,791	-		BT3516	0.53	+0.2
4,540,791	-		BT3516	0.53	+0.5
4,540,791	-		BT3516	0.53	-1.5
4,540,791	-		BT3516	0.53	-1.3
4,540,791	-		BT3516	0.53	-1.7
4,540,791	-		BT3516	0.53	-2.7
4,540,823	+		BT3516	0.55	-1.4
4,540,823	+		BT3516	0.55	-2.0
4,540,824	-		BT3516	0.55	-0.0
4,540,824	-		BT3516	0.55	-1.8
4,540,826	+		BT3516	0.55	-0.3
4,540,848	+		BT3516	0.56	-1.5
4,540,849	-		BT3516	0.56	+2.1
4,540,849	-		BT3516	0.56	-0.8
4,540,851	+		BT3516	0.56	+0.5
4,540,855	-		BT3516	0.56	-1.3
4,540,858	+		BT3516	0.56	-0.5
4,540,858	+		BT3516	0.56	-0.6
4,540,859	-		BT3516	0.57	-0.8
4,540,859	-		BT3516	0.57	+1.2
4,540,859	-		BT3516	0.57	-1.1
4,540,860	+		BT3516	0.57	-0.0
4,540,861	-		BT3516	0.57	-1.6
4,540,877	+		BT3516	0.57	-1.2
4,540,885	+		BT3516	0.58	-0.8
4,540,923	+		BT3516	0.60	+0.5
4,540,923	+		BT3516	0.60	-1.6
4,540,927	+		BT3516	0.60	-1.6
4,540,927	+		BT3516	0.60	+0.5
4,540,927	+		BT3516	0.60	-1.5
4,540,927	+		BT3516	0.60	-1.6
4,540,971	-		BT3516	0.62	-1.3
4,541,017	-		BT3516	0.65	-0.8
4,541,026	-		BT3516	0.65	-0.5
4,541,029	-		BT3516	0.65	-0.5
4,541,033	+		BT3516	0.66	-3.3
4,541,073	-		BT3516	0.68	-1.2
4,541,078	+		BT3516	0.68	-0.1
4,541,079	-		BT3516	0.68	+0.4
4,541,122	+		BT3516	0.70	-0.8
4,541,123	-		BT3516	0.70	-0.6
4,541,146	+		BT3516	0.72	+0.7
4,541,180	+		BT3516	0.73	+0.3
4,541,193	+		BT3516	0.74	-0.4
4,541,194	-		BT3516	0.74	-0.1
4,541,221	+		BT3516	0.75	+2.6
4,541,222	-		BT3516	0.75	-0.4
4,541,222	-		BT3516	0.75	-1.6
4,541,222	-		BT3516	0.75	+0.3
4,541,223	+		BT3516	0.76	-1.9
4,541,224	-		BT3516	0.76	+0.1
4,541,228	+		BT3516	0.76	-1.3
4,541,298	+		BT3516	0.79	-0.0
4,541,299	-		BT3516	0.80	-0.3
4,541,306	+		BT3516	0.80	-1.6
4,541,307	-		BT3516	0.80	+0.7
4,541,307	-		BT3516	0.80	-0.6
4,541,310	+		BT3516	0.80	-1.9
4,541,310	+		BT3516	0.80	-2.4
4,541,310	+		BT3516	0.80	-2.2
4,541,310	+		BT3516	0.80	+0.5
4,541,310	+		BT3516	0.80	-0.1
4,541,311	-		BT3516	0.80	-1.5
4,541,311	-		BT3516	0.80	-1.0
4,541,311	-		BT3516	0.80	-0.8
4,541,332	-		BT3516	0.81	-1.0
4,541,334	+		BT3516	0.81	-3.1
4,541,334	+		BT3516	0.81	+0.4
4,541,385	+		BT3516	0.84	+0.3
4,541,385	+		BT3516	0.84	-0.8
4,541,385	+		BT3516	0.84	-1.7
4,541,386	-		BT3516	0.84	-1.3
4,541,387	+		BT3516	0.84	+0.8
4,541,387	+		BT3516	0.84	+1.0
4,541,387	+		BT3516	0.84	-0.4
4,541,428	-		BT3516	0.86	-1.2
4,541,534	+				-0.4
4,541,535	-				-2.0
4,541,559	+				-0.1
4,541,559	+				-2.0
4,541,560	-				-0.1
4,541,654	-				-0.3
4,541,701	-				-0.9
4,541,706	+				-1.0
4,541,706	+				-4.1
4,541,706	+				-0.0
4,541,706	+				-0.7
4,541,738	+				+0.1
4,541,738	+				-0.2
4,541,802	+				-1.4
4,541,832	+				-1.1
4,541,875	+				-0.4
4,541,877	+				+1.4
4,541,933	-				-0.5
4,541,943	+				+1.6
4,541,944	-				-0.4
4,541,960	-				-1.0
4,542,019	-		BT3517	0.13	-2.1
4,542,032	+		BT3517	0.15	-0.0
4,542,044	-		BT3517	0.17	-1.9
4,542,067	+		BT3517	0.21	-1.3
4,542,068	-		BT3517	0.21	-2.3
4,542,072	+		BT3517	0.22	-2.4
4,542,167	+		BT3517	0.39	-2.3
4,542,168	-		BT3517	0.39	-0.4
4,542,169	+		BT3517	0.39	-2.1
4,542,170	-		BT3517	0.39	-1.0
4,542,170	-		BT3517	0.39	-0.8
4,542,206	+		BT3517	0.45	-1.9
4,542,304	-		BT3517	0.62	-1.6
4,542,308	-		BT3517	0.63	-0.9
4,542,330	-		BT3517	0.67	-1.5
4,542,335	+		BT3517	0.68	-0.0
4,542,351	-		BT3517	0.71	-1.0
4,542,395	+		BT3517	0.78	-1.0
4,542,405	-		BT3517	0.80	-1.4
4,542,450	+		BT3517	0.88	-2.1
4,542,460	+		BT3517	0.90	-1.3
4,542,464	+				-2.0
4,542,503	-				-1.0
4,542,503	-				-0.7
4,542,589	-				+0.6
4,542,609	-				+0.6
4,542,618	+				-0.0
4,542,618	+				-1.6
4,542,668	-				-0.0
4,542,673	+				-0.0
4,542,673	+				+0.6