Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3515

Experiment: Post-colonization (Day 10) - Cage6;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 10) - Cage6;Mouse2
4,537,528	-		BT3514	0.67	-0.2
4,537,545	+		BT3514	0.68	-0.6
4,537,575	+		BT3514	0.69	-1.4
4,537,576	-		BT3514	0.69	+0.0
4,537,653	-		BT3514	0.71	-1.0
4,537,675	-		BT3514	0.72	-0.9
4,537,683	-		BT3514	0.72	-2.1
4,537,696	+		BT3514	0.73	+1.1
4,537,696	+		BT3514	0.73	-0.6
4,537,700	+		BT3514	0.73	-0.6
4,537,700	+		BT3514	0.73	-0.3
4,537,700	+		BT3514	0.73	-1.8
4,537,701	-		BT3514	0.73	-1.9
4,537,702	+		BT3514	0.73	-1.5
4,537,702	+		BT3514	0.73	-1.4
4,537,702	+		BT3514	0.73	-1.5
4,537,702	+		BT3514	0.73	-3.0
4,537,703	-		BT3514	0.73	-0.9
4,537,704	+		BT3514	0.73	-0.5
4,537,704	+		BT3514	0.73	+1.6
4,537,705	-		BT3514	0.73	-1.0
4,537,726	+		BT3514	0.74	-1.5
4,537,726	+		BT3514	0.74	+0.6
4,537,803	-		BT3514	0.76	-1.0
4,537,806	+		BT3514	0.76	-0.5
4,537,806	+		BT3514	0.76	+1.9
4,537,806	+		BT3514	0.76	+1.1
4,537,806	+		BT3514	0.76	-0.7
4,537,807	-		BT3514	0.76	-0.2
4,537,807	-		BT3514	0.76	-4.4
4,537,807	-		BT3514	0.76	-1.3
4,537,807	-		BT3514	0.76	-0.2
4,537,809	-		BT3514	0.77	-1.5
4,537,811	-		BT3514	0.77	-0.0
4,537,866	-		BT3514	0.78	-0.8
4,537,906	+		BT3514	0.80	-0.7
4,537,906	+		BT3514	0.80	-1.6
4,537,950	+		BT3514	0.81	-1.1
4,537,950	+		BT3514	0.81	+1.6
4,538,012	+		BT3514	0.83	-1.0
4,538,012	+		BT3514	0.83	+1.6
4,538,147	+		BT3514	0.88	-0.5
4,538,147	+		BT3514	0.88	-1.1
4,538,148	-		BT3514	0.88	-2.5
4,538,160	+		BT3514	0.88	-2.4
4,538,168	-		BT3514	0.89	+0.1
4,538,168	-		BT3514	0.89	-1.3
4,538,168	-		BT3514	0.89	-0.8
4,538,169	+		BT3514	0.89	-0.7
4,538,169	+		BT3514	0.89	-1.3
4,538,172	-		BT3514	0.89	+0.1
4,538,172	-		BT3514	0.89	+0.8
4,538,172	-		BT3514	0.89	-2.0
4,538,232	-				-1.2
4,538,232	-				-0.4
4,538,234	+				+0.4
4,538,235	-				-0.2
4,538,250	+				-0.5
4,538,250	+				-0.5
4,538,250	+				+1.0
4,538,251	-				-1.3
4,538,251	-				-0.7
4,538,251	-				+0.4
4,538,327	+				-1.3
4,538,361	-				-2.0
4,538,367	+				-2.0
4,538,372	-				-3.1
4,538,401	+				-0.0
4,538,401	+				-1.4
4,538,402	-				-0.8
4,538,470	-				-0.1
4,538,495	+				-1.5
4,538,601	-				-2.1
4,538,671	-		BT3515	0.15	-1.6
4,538,672	+		BT3515	0.15	+0.2
4,538,673	-		BT3515	0.15	-1.8
4,538,673	-		BT3515	0.15	-1.0
4,538,673	-		BT3515	0.15	-2.3
4,538,673	-		BT3515	0.15	-1.9
4,538,677	+		BT3515	0.15	-1.0
4,538,678	-		BT3515	0.15	-1.5
4,538,680	-		BT3515	0.16	-0.5
4,538,730	+		BT3515	0.20	-0.0
4,538,732	+		BT3515	0.20	-2.5
4,538,733	-		BT3515	0.20	-2.0
4,538,798	+		BT3515	0.26	-1.5
4,538,799	-		BT3515	0.26	-1.6
4,538,839	-		BT3515	0.29	-2.8
4,538,839	-		BT3515	0.29	-3.5
4,538,924	+		BT3515	0.36	-1.7
4,538,925	-		BT3515	0.36	-1.8
4,538,925	-		BT3515	0.36	-1.3
4,538,925	-		BT3515	0.36	-0.0
4,538,930	+		BT3515	0.37	-0.8
4,538,938	-		BT3515	0.38	-0.5
4,539,041	-		BT3515	0.46	-3.5
4,539,052	-		BT3515	0.47	-2.0
4,539,055	+		BT3515	0.48	-0.0
4,539,101	+		BT3515	0.52	-0.8
4,539,101	+		BT3515	0.52	-0.0
4,539,102	-		BT3515	0.52	-3.0
4,539,106	+		BT3515	0.52	-1.0
4,539,107	-		BT3515	0.52	-0.5
4,539,163	+		BT3515	0.57	-1.3
4,539,163	+		BT3515	0.57	-1.4
4,539,164	-		BT3515	0.57	-3.2
4,539,173	+		BT3515	0.58	-0.0
4,539,253	+		BT3515	0.65	-1.7
4,539,277	-		BT3515	0.67	-2.2
4,539,281	-		BT3515	0.67	-0.5
4,539,282	+		BT3515	0.67	-0.0
4,539,293	-		BT3515	0.68	-1.6
4,539,297	-		BT3515	0.68	-2.2
4,539,327	+		BT3515	0.71	-0.3
4,539,327	+		BT3515	0.71	-1.4
4,539,327	+		BT3515	0.71	-3.7
4,539,328	-		BT3515	0.71	-1.5
4,539,328	-		BT3515	0.71	+1.5
4,539,356	+		BT3515	0.73	-1.1
4,539,356	+		BT3515	0.73	-2.2
4,539,356	+		BT3515	0.73	-2.5
4,539,356	+		BT3515	0.73	-1.3
4,539,356	+		BT3515	0.73	+1.1
4,539,357	-		BT3515	0.73	-2.9
4,539,357	-		BT3515	0.73	-1.0
4,539,357	-		BT3515	0.73	-0.8
4,539,357	-		BT3515	0.73	-0.5
4,539,390	-		BT3515	0.76	-1.3
4,539,390	-		BT3515	0.76	-1.3
4,539,410	+		BT3515	0.78	-0.0
4,539,411	-		BT3515	0.78	+2.5
4,539,411	-		BT3515	0.78	-2.0
4,539,437	-		BT3515	0.80	-1.7
4,539,439	-		BT3515	0.80	-0.0
4,539,505	-		BT3515	0.86	-1.8
4,539,550	+		BT3515	0.90	-1.3
4,539,551	-				-2.6
4,539,573	-				-1.0
4,539,580	+				-0.4
4,539,630	-				-1.0
4,539,649	+				-2.0
4,539,661	-				-1.7
4,539,774	+				+0.5
4,539,775	-				-1.8
4,539,775	-				-2.3
4,539,824	-				-0.3
4,539,827	+				-2.0
4,539,828	-				-0.0
4,539,828	-				-1.0
4,539,829	+				-0.8
4,539,870	-				-0.3
4,539,870	-				-0.8
4,539,891	+				+1.2
4,539,936	+				-0.0
4,539,936	+				-0.3
4,539,942	-				-0.4
4,539,945	+				+0.8
4,539,958	-				+0.5
4,540,003	+		BT3516	0.12	-0.0
4,540,028	-		BT3516	0.13	-1.0
4,540,044	-		BT3516	0.14	-0.8
4,540,092	-		BT3516	0.16	-2.2
4,540,169	-		BT3516	0.20	-0.5
4,540,232	-		BT3516	0.24	-0.4
4,540,232	-		BT3516	0.24	-1.3
4,540,265	+		BT3516	0.25	-1.0
4,540,287	+		BT3516	0.27	-0.3
4,540,288	-		BT3516	0.27	-0.5
4,540,293	+		BT3516	0.27	-1.1
4,540,293	+		BT3516	0.27	+0.5
4,540,294	-		BT3516	0.27	-1.8
4,540,294	-		BT3516	0.27	+0.2
4,540,296	+		BT3516	0.27	+0.2
4,540,296	+		BT3516	0.27	-2.5
4,540,297	-		BT3516	0.27	-0.5
4,540,316	+		BT3516	0.28	+0.4
4,540,316	+		BT3516	0.28	-2.5
4,540,316	+		BT3516	0.28	-0.0
4,540,316	+		BT3516	0.28	-2.5
4,540,317	-		BT3516	0.28	-2.4
4,540,317	-		BT3516	0.28	+0.1
4,540,317	-		BT3516	0.28	+2.1
4,540,319	+		BT3516	0.28	-1.6
4,540,373	+		BT3516	0.31	-1.0
4,540,374	-		BT3516	0.31	+0.1
4,540,374	-		BT3516	0.31	-1.5
4,540,377	+		BT3516	0.31	+0.7
4,540,377	+		BT3516	0.31	-0.4
4,540,401	+		BT3516	0.33	-0.8
4,540,431	-		BT3516	0.34	-1.2
4,540,448	+		BT3516	0.35	-0.4
4,540,449	-		BT3516	0.35	-0.7
4,540,483	-		BT3516	0.37	-0.8
4,540,485	-		BT3516	0.37	-1.3
4,540,489	+		BT3516	0.37	+0.2
4,540,490	-		BT3516	0.37	-0.4
4,540,494	+		BT3516	0.37	-0.3
4,540,495	-		BT3516	0.38	-0.0
4,540,559	+		BT3516	0.41	-0.5
4,540,559	+		BT3516	0.41	+0.3
4,540,560	-		BT3516	0.41	-1.3
4,540,560	-		BT3516	0.41	+1.1
4,540,562	+		BT3516	0.41	+0.8
4,540,563	-		BT3516	0.41	+1.8
4,540,563	-		BT3516	0.41	+0.4
4,540,564	+		BT3516	0.41	-0.2
4,540,564	+		BT3516	0.41	-1.0
4,540,564	+		BT3516	0.41	+0.5
4,540,565	-		BT3516	0.41	-0.8
4,540,565	-		BT3516	0.41	+0.5
4,540,591	+		BT3516	0.43	-0.7
4,540,596	-		BT3516	0.43	-0.2
4,540,596	-		BT3516	0.43	-0.2
4,540,621	-		BT3516	0.44	-0.1
4,540,621	-		BT3516	0.44	-0.5
4,540,621	-		BT3516	0.44	-0.8