Experiment: Post-colonization (Day 10) - Cage6;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0550 and BT0551 are separated by 223 nucleotides BT0551 and BT0552 are separated by 206 nucleotides
BT0550: BT0550 - putative glycerophosphodiester phosphodiesterase (NCBI ptt file), at 676,005 to 676,742
BT0550
BT0551: BT0551 - asparagine synthetase B [glutamine-hydrolyzing] (NCBI ptt file), at 676,966 to 678,645
BT0551
BT0552: BT0552 - glutamate synthase, small subunit (NCBI ptt file), at 678,852 to 680,192
BT0552
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 676.002 kb on + strand at 676.094 kb on + strand, within BT0550 at 676.095 kb on - strand, within BT0550 at 676.107 kb on + strand, within BT0550 at 676.225 kb on - strand, within BT0550 at 676.225 kb on - strand, within BT0550 at 676.391 kb on + strand, within BT0550 at 676.422 kb on - strand, within BT0550 at 676.535 kb on + strand, within BT0550 at 676.536 kb on - strand, within BT0550 at 676.578 kb on - strand, within BT0550 at 676.584 kb on + strand, within BT0550 at 676.585 kb on - strand, within BT0550 at 676.832 kb on - strand at 676.913 kb on + strand at 676.914 kb on - strand at 676.936 kb on - strand at 677.121 kb on - strand at 677.241 kb on + strand, within BT0551 at 677.330 kb on - strand, within BT0551 at 677.411 kb on - strand, within BT0551 at 677.496 kb on - strand, within BT0551 at 677.499 kb on + strand, within BT0551 at 677.518 kb on - strand, within BT0551 at 677.674 kb on + strand, within BT0551 at 677.911 kb on - strand, within BT0551 at 677.951 kb on - strand, within BT0551 at 678.102 kb on - strand, within BT0551 at 678.138 kb on + strand, within BT0551 at 678.176 kb on + strand, within BT0551 at 678.177 kb on - strand, within BT0551 at 678.206 kb on + strand, within BT0551 at 678.207 kb on - strand, within BT0551 at 678.208 kb on + strand, within BT0551 at 678.266 kb on + strand, within BT0551 at 678.324 kb on + strand, within BT0551 at 678.371 kb on + strand, within BT0551 at 678.455 kb on + strand, within BT0551 at 678.458 kb on - strand, within BT0551 at 678.596 kb on - strand at 678.626 kb on - strand at 678.626 kb on - strand at 678.672 kb on - strand at 678.712 kb on + strand at 678.717 kb on - strand at 678.717 kb on - strand at 678.795 kb on + strand at 678.813 kb on - strand at 678.821 kb on - strand at 678.823 kb on - strand at 678.853 kb on + strand at 678.915 kb on + strand at 679.026 kb on + strand, within BT0552 at 679.113 kb on + strand, within BT0552 at 679.118 kb on + strand, within BT0552 at 679.588 kb on - strand, within BT0552
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage6;Mouse2 remove 676,002 + -0.9 676,094 + BT0550 0.12 -0.9 676,095 - BT0550 0.12 -2.5 676,107 + BT0550 0.14 -0.8 676,225 - BT0550 0.30 +0.1 676,225 - BT0550 0.30 -0.1 676,391 + BT0550 0.52 -1.7 676,422 - BT0550 0.57 -3.6 676,535 + BT0550 0.72 +0.3 676,536 - BT0550 0.72 +0.5 676,578 - BT0550 0.78 -1.5 676,584 + BT0550 0.78 +1.2 676,585 - BT0550 0.79 -1.7 676,832 - -2.3 676,913 + +0.1 676,914 - -1.3 676,936 - -0.5 677,121 - -1.1 677,241 + BT0551 0.16 -2.4 677,330 - BT0551 0.22 -3.0 677,411 - BT0551 0.26 -1.2 677,496 - BT0551 0.32 -1.5 677,499 + BT0551 0.32 -3.4 677,518 - BT0551 0.33 -0.5 677,674 + BT0551 0.42 -7.0 677,911 - BT0551 0.56 -1.5 677,951 - BT0551 0.59 -1.8 678,102 - BT0551 0.68 -2.1 678,138 + BT0551 0.70 -3.7 678,176 + BT0551 0.72 -1.3 678,177 - BT0551 0.72 -0.1 678,206 + BT0551 0.74 -0.8 678,207 - BT0551 0.74 -0.7 678,208 + BT0551 0.74 -2.4 678,266 + BT0551 0.77 -4.6 678,324 + BT0551 0.81 -0.3 678,371 + BT0551 0.84 -1.5 678,455 + BT0551 0.89 +1.2 678,458 - BT0551 0.89 -0.8 678,596 - -0.5 678,626 - -1.8 678,626 - -0.5 678,672 - +2.1 678,712 + -0.9 678,717 - -1.7 678,717 - -0.7 678,795 + -0.4 678,813 - +0.5 678,821 - +0.5 678,823 - +0.5 678,853 + -1.5 678,915 + -3.3 679,026 + BT0552 0.13 -1.7 679,113 + BT0552 0.19 -2.3 679,118 + BT0552 0.20 -1.1 679,588 - BT0552 0.55 -2.3
Or see this region's nucleotide sequence