Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0739 and Psest_0740 are separated by 4 nucleotides Psest_0740 and Psest_0741 are separated by 86 nucleotides Psest_0741 and Psest_0742 are separated by 3 nucleotides Psest_0742 and Psest_0743 are separated by 100 nucleotides
Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430
_0739
Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199
_0740
Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458
_0741
Psest_0742: Psest_0742 - hypothetical protein, at 815,462 to 815,626
_0742
Psest_0743: Psest_0743 - adenosine deaminase, at 815,727 to 816,776
_0743
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 813.940 kb on + strand, within Psest_0740 at 813.940 kb on + strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 814.145 kb on - strand at 814.173 kb on + strand at 814.174 kb on - strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.308 kb on + strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.427 kb on + strand, within Psest_0741 at 814.427 kb on + strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.460 kb on + strand, within Psest_0741 at 814.832 kb on + strand, within Psest_0741 at 814.833 kb on - strand, within Psest_0741 at 814.880 kb on + strand, within Psest_0741 at 814.881 kb on - strand, within Psest_0741 at 814.948 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 815.573 kb on - strand, within Psest_0742 at 815.595 kb on + strand, within Psest_0742 at 815.640 kb on + strand at 815.642 kb on + strand at 815.830 kb on + strand at 815.842 kb on + strand, within Psest_0743 at 815.843 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.071 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743 at 816.455 kb on - strand, within Psest_0743
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 813,940 + Psest_0740 0.66 -3.1 813,940 + Psest_0740 0.66 -2.4 813,941 - Psest_0740 0.66 +0.8 813,941 - Psest_0740 0.66 +0.3 814,145 - +1.2 814,173 + -0.5 814,174 - +0.0 814,187 + -0.2 814,187 + +1.3 814,187 + -0.7 814,187 + +1.3 814,187 + -0.1 814,187 + -1.4 814,187 + +0.9 814,187 + -1.1 814,187 + -1.4 814,187 + -0.6 814,187 + -1.7 814,187 + +1.3 814,187 + +0.7 814,187 + -1.1 814,188 - +1.9 814,188 - -2.2 814,188 - -0.3 814,188 - +0.5 814,188 - -0.7 814,192 - +1.6 814,192 - -0.7 814,192 - +1.2 814,192 - -2.2 814,308 + +0.5 814,309 - -1.9 814,309 - +0.5 814,309 - +0.5 814,352 + +0.6 814,352 + +0.6 814,352 + +0.5 814,352 + +0.4 814,352 + -0.4 814,352 + +0.5 814,352 + +0.7 814,352 + +0.2 814,352 + +2.0 814,352 + +1.0 814,352 + -0.1 814,352 + +0.2 814,352 + +0.2 814,352 + +0.5 814,352 + -0.6 814,352 + +5.5 814,353 - -0.6 814,353 - -1.4 814,353 - +1.9 814,353 - -0.8 814,353 - +0.5 814,353 - +0.2 814,353 - +0.8 814,353 - +1.6 814,353 - +0.9 814,353 - +0.5 814,353 - -0.0 814,353 - +1.7 814,353 - -0.4 814,353 - -0.1 814,353 - -0.7 814,353 - +1.1 814,353 - -0.5 814,353 - -0.0 814,353 - -0.7 814,353 - +0.6 814,353 - -0.7 814,427 + Psest_0741 0.12 +1.3 814,427 + Psest_0741 0.12 -3.3 814,428 - Psest_0741 0.12 +2.3 814,428 - Psest_0741 0.12 +0.5 814,460 + Psest_0741 0.15 +0.9 814,832 + Psest_0741 0.47 +2.0 814,833 - Psest_0741 0.47 -0.9 814,880 + Psest_0741 0.51 +0.5 814,881 - Psest_0741 0.51 -0.3 814,948 + Psest_0741 0.56 +3.0 814,958 + Psest_0741 0.57 +0.4 814,958 + Psest_0741 0.57 +1.3 814,959 - Psest_0741 0.57 -0.2 814,959 - Psest_0741 0.57 +2.8 814,959 - Psest_0741 0.57 -1.5 814,994 + Psest_0741 0.60 -0.7 814,994 + Psest_0741 0.60 +1.0 815,573 - Psest_0742 0.67 -1.9 815,595 + Psest_0742 0.81 +2.7 815,640 + +0.4 815,642 + -1.2 815,830 + -0.3 815,842 + Psest_0743 0.11 -0.7 815,843 - Psest_0743 0.11 +0.4 816,071 - Psest_0743 0.33 +0.4 816,071 - Psest_0743 0.33 +0.3 816,455 - Psest_0743 0.69 +1.5 816,455 - Psest_0743 0.69 +1.0 816,455 - Psest_0743 0.69 +0.9
Or see this region's nucleotide sequence