Experiment: Post-colonization (Day 10) - Cage5;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0412 and BT0413 are separated by 16 nucleotides BT0413 and BT0414 are separated by 20 nucleotides BT0414 and BT0415 are separated by 39 nucleotides
BT0412: BT0412 - putative Na+/sulfate symporter (NCBI ptt file), at 497,948 to 499,501
BT0412
BT0413: BT0413 - putative adenylylsulfate kinase (NCBI ptt file), at 499,518 to 500,123
BT0413
BT0414: BT0414 - sulfate adenylyltransferase subunit 2 (NCBI ptt file), at 500,144 to 501,052
BT0414
BT0415: BT0415 - sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file), at 501,092 to 502,549
BT0415
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 499.153 kb on + strand, within BT0412 at 499.176 kb on - strand, within BT0412 at 499.192 kb on - strand, within BT0412 at 499.201 kb on - strand, within BT0412 at 499.333 kb on + strand, within BT0412 at 499.506 kb on + strand at 499.507 kb on - strand at 499.798 kb on - strand, within BT0413 at 499.959 kb on + strand, within BT0413 at 500.330 kb on - strand, within BT0414 at 500.417 kb on - strand, within BT0414 at 500.474 kb on - strand, within BT0414 at 500.732 kb on + strand, within BT0414 at 500.807 kb on - strand, within BT0414 at 500.809 kb on + strand, within BT0414 at 500.810 kb on - strand, within BT0414 at 501.110 kb on - strand at 501.294 kb on + strand, within BT0415 at 501.300 kb on - strand, within BT0415 at 501.300 kb on - strand, within BT0415 at 501.347 kb on - strand, within BT0415 at 501.369 kb on - strand, within BT0415 at 501.369 kb on - strand, within BT0415 at 501.427 kb on + strand, within BT0415 at 501.428 kb on - strand, within BT0415 at 501.531 kb on + strand, within BT0415 at 501.618 kb on + strand, within BT0415 at 501.710 kb on - strand, within BT0415 at 501.818 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage5;Mouse2 remove 499,153 + BT0412 0.78 -0.9 499,176 - BT0412 0.79 -0.5 499,192 - BT0412 0.80 -2.2 499,201 - BT0412 0.81 -1.3 499,333 + BT0412 0.89 -0.1 499,506 + -2.5 499,507 - -0.7 499,798 - BT0413 0.46 -0.1 499,959 + BT0413 0.73 -1.1 500,330 - BT0414 0.20 -1.3 500,417 - BT0414 0.30 -0.8 500,474 - BT0414 0.36 -2.4 500,732 + BT0414 0.65 -0.5 500,807 - BT0414 0.73 +1.5 500,809 + BT0414 0.73 +7.1 500,810 - BT0414 0.73 -0.5 501,110 - -0.1 501,294 + BT0415 0.14 -0.9 501,300 - BT0415 0.14 -1.3 501,300 - BT0415 0.14 -1.3 501,347 - BT0415 0.17 -1.8 501,369 - BT0415 0.19 -1.5 501,369 - BT0415 0.19 +1.5 501,427 + BT0415 0.23 -0.8 501,428 - BT0415 0.23 -1.3 501,531 + BT0415 0.30 -2.1 501,618 + BT0415 0.36 -1.5 501,710 - BT0415 0.42 -2.1 501,818 + BT0415 0.50 -0.9 501,892 + BT0415 0.55 -1.0 501,892 + BT0415 0.55 +0.5
Or see this region's nucleotide sequence