Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0853

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0852 and Psest_0853 overlap by 14 nucleotidesPsest_0853 and Psest_0854 are separated by 18 nucleotidesPsest_0854 and Psest_0855 are separated by 70 nucleotides Psest_0852: Psest_0852 - glucose-6-phosphate 1-dehydrogenase, at 922,531 to 924,000 _0852 Psest_0853: Psest_0853 - 6-phosphogluconolactonase, at 923,987 to 924,700 _0853 Psest_0854: Psest_0854 - Entner-Doudoroff aldolase, at 924,719 to 925,456 _0854 Psest_0855: Psest_0855 - NAD-dependent aldehyde dehydrogenases, at 925,527 to 927,155 _0855 Position (kb) 923 924 925Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 923.041 kb on + strand, within Psest_0852at 923.041 kb on + strand, within Psest_0852at 923.056 kb on + strand, within Psest_0852at 923.387 kb on - strand, within Psest_0852at 923.426 kb on - strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.596 kb on + strand, within Psest_0852at 923.596 kb on + strand, within Psest_0852at 923.597 kb on - strand, within Psest_0852at 923.758 kb on + strand, within Psest_0852at 923.759 kb on - strand, within Psest_0852at 923.855 kb on - strandat 923.920 kb on + strandat 923.986 kb on + strandat 923.986 kb on + strandat 923.998 kb on + strandat 924.321 kb on - strand, within Psest_0853at 924.370 kb on - strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.686 kb on + strandat 924.687 kb on - strandat 924.687 kb on - strandat 924.727 kb on + strandat 924.728 kb on - strandat 925.262 kb on + strand, within Psest_0854at 925.263 kb on - strand, within Psest_0854at 925.620 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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923,041 + Psest_0852 0.35 -2.2
923,041 + Psest_0852 0.35 -3.8
923,056 + Psest_0852 0.36 -3.5
923,387 - Psest_0852 0.58 -3.7
923,426 - Psest_0852 0.61 -3.6
923,524 + Psest_0852 0.68 -3.0
923,524 + Psest_0852 0.68 -4.3
923,524 + Psest_0852 0.68 -5.6
923,596 + Psest_0852 0.72 -1.1
923,596 + Psest_0852 0.72 -3.7
923,597 - Psest_0852 0.73 -2.5
923,758 + Psest_0852 0.83 -4.8
923,759 - Psest_0852 0.84 -2.5
923,855 - -1.1
923,920 + -3.9
923,986 + -2.9
923,986 + -1.9
923,998 + -4.3
924,321 - Psest_0853 0.47 -3.5
924,370 - Psest_0853 0.54 -1.7
924,396 + Psest_0853 0.57 -1.1
924,396 + Psest_0853 0.57 -3.3
924,396 + Psest_0853 0.57 -3.0
924,396 + Psest_0853 0.57 -1.5
924,396 + Psest_0853 0.57 -2.4
924,397 - Psest_0853 0.57 -2.4
924,397 - Psest_0853 0.57 -1.9
924,397 - Psest_0853 0.57 -1.4
924,397 - Psest_0853 0.57 -2.8
924,397 - Psest_0853 0.57 -2.9
924,686 + -1.9
924,687 - -4.1
924,687 - -4.8
924,727 + -0.1
924,728 - -2.4
925,262 + Psest_0854 0.74 -3.2
925,263 - Psest_0854 0.74 -1.9
925,620 + -5.5
925,621 - -1.8
925,621 - -4.1

Or see this region's nucleotide sequence