Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0245

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0242 and Psest_0243 overlap by 1 nucleotidesPsest_0243 and Psest_0244 are separated by 107 nucleotidesPsest_0244 and Psest_0245 are separated by 105 nucleotidesPsest_0245 and Psest_0246 are separated by 15 nucleotidesPsest_0246 and Psest_0247 are separated by 14 nucleotides Psest_0242: Psest_0242 - gamma-glutamyltranspeptidase, at 252,880 to 254,613 _0242 Psest_0243: Psest_0243 - hypothetical protein, at 254,613 to 254,864 _0243 Psest_0244: Psest_0244 - pantetheine-phosphate adenylyltransferase, bacterial, at 254,972 to 255,454 _0244 Psest_0245: Psest_0245 - Choline dehydrogenase and related flavoproteins, at 255,560 to 257,155 _0245 Psest_0246: Psest_0246 - hypothetical protein, at 257,171 to 257,701 _0246 Psest_0247: Psest_0247 - NAD-dependent aldehyde dehydrogenases, at 257,716 to 259,128 _0247 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.638 kb on + strandat 254.638 kb on + strandat 254.639 kb on - strand, within Psest_0243at 254.639 kb on - strand, within Psest_0243at 254.906 kb on - strandat 254.906 kb on - strandat 254.909 kb on - strandat 254.909 kb on - strandat 255.615 kb on + strandat 255.671 kb on + strandat 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.836 kb on - strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.839 kb on + strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.840 kb on - strand, within Psest_0245at 255.942 kb on + strand, within Psest_0245at 255.943 kb on - strand, within Psest_0245at 255.943 kb on - strand, within Psest_0245at 256.201 kb on - strand, within Psest_0245at 256.201 kb on - strand, within Psest_0245at 256.274 kb on + strand, within Psest_0245at 256.274 kb on + strand, within Psest_0245at 256.275 kb on - strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.368 kb on + strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.369 kb on - strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.491 kb on + strand, within Psest_0245at 256.492 kb on - strand, within Psest_0245at 256.492 kb on - strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.658 kb on + strand, within Psest_0245at 256.659 kb on - strand, within Psest_0245at 256.661 kb on + strand, within Psest_0245at 256.981 kb on + strand, within Psest_0245at 256.995 kb on + strand, within Psest_0245at 257.735 kb on + strandat 257.735 kb on + strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.762 kb on + strandat 257.772 kb on - strandat 257.996 kb on + strand, within Psest_0247at 257.996 kb on + strand, within Psest_0247at 257.997 kb on - strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.033 kb on - strand, within Psest_0247at 258.060 kb on - strand, within Psest_0247

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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254,638 + +1.3
254,638 + +0.4
254,639 - Psest_0243 0.10 -0.3
254,639 - Psest_0243 0.10 +0.5
254,906 - +0.2
254,906 - -0.6
254,909 - -0.3
254,909 - +1.0
255,615 + +1.2
255,671 + -1.6
255,836 - Psest_0245 0.17 -0.1
255,836 - Psest_0245 0.17 +0.2
255,836 - Psest_0245 0.17 +3.4
255,836 - Psest_0245 0.17 +0.4
255,839 + Psest_0245 0.17 -1.6
255,839 + Psest_0245 0.17 -1.8
255,839 + Psest_0245 0.17 +1.0
255,839 + Psest_0245 0.17 +1.9
255,839 + Psest_0245 0.17 +1.3
255,839 + Psest_0245 0.17 +1.0
255,839 + Psest_0245 0.17 +0.2
255,839 + Psest_0245 0.17 -0.8
255,839 + Psest_0245 0.17 -0.2
255,839 + Psest_0245 0.17 -1.3
255,839 + Psest_0245 0.17 -0.1
255,839 + Psest_0245 0.17 -1.2
255,840 - Psest_0245 0.18 -1.9
255,840 - Psest_0245 0.18 -1.6
255,840 - Psest_0245 0.18 -0.7
255,840 - Psest_0245 0.18 -0.1
255,840 - Psest_0245 0.18 -1.1
255,840 - Psest_0245 0.18 -1.0
255,840 - Psest_0245 0.18 +0.7
255,942 + Psest_0245 0.24 +1.7
255,943 - Psest_0245 0.24 -0.9
255,943 - Psest_0245 0.24 -2.2
256,201 - Psest_0245 0.40 -0.5
256,201 - Psest_0245 0.40 +0.3
256,274 + Psest_0245 0.45 -2.3
256,274 + Psest_0245 0.45 -3.0
256,275 - Psest_0245 0.45 -1.6
256,368 + Psest_0245 0.51 -0.6
256,368 + Psest_0245 0.51 +0.6
256,368 + Psest_0245 0.51 +0.5
256,368 + Psest_0245 0.51 +0.0
256,368 + Psest_0245 0.51 -1.0
256,369 - Psest_0245 0.51 -0.4
256,369 - Psest_0245 0.51 +1.3
256,369 - Psest_0245 0.51 -1.6
256,491 + Psest_0245 0.58 -0.6
256,491 + Psest_0245 0.58 +1.5
256,491 + Psest_0245 0.58 -0.4
256,491 + Psest_0245 0.58 -1.0
256,492 - Psest_0245 0.58 -1.0
256,492 - Psest_0245 0.58 -1.0
256,658 + Psest_0245 0.69 -0.1
256,658 + Psest_0245 0.69 -0.1
256,658 + Psest_0245 0.69 +0.4
256,659 - Psest_0245 0.69 +1.3
256,661 + Psest_0245 0.69 +1.6
256,981 + Psest_0245 0.89 -1.6
256,995 + Psest_0245 0.90 -1.8
257,735 + -2.8
257,735 + -2.3
257,736 - -0.3
257,736 - +0.9
257,736 - +0.4
257,736 - +1.1
257,736 - +1.6
257,736 - +0.7
257,736 - +0.1
257,736 - +0.4
257,762 + -2.8
257,772 - +0.1
257,996 + Psest_0247 0.20 +1.0
257,996 + Psest_0247 0.20 -0.8
257,997 - Psest_0247 0.20 +0.8
257,999 + Psest_0247 0.20 -2.0
257,999 + Psest_0247 0.20 -0.6
257,999 + Psest_0247 0.20 -2.5
257,999 + Psest_0247 0.20 -0.4
258,000 - Psest_0247 0.20 +1.9
258,000 - Psest_0247 0.20 -0.6
258,000 - Psest_0247 0.20 -2.3
258,000 - Psest_0247 0.20 -1.0
258,032 + Psest_0247 0.22 -0.8
258,032 + Psest_0247 0.22 -1.0
258,032 + Psest_0247 0.22 -0.1
258,032 + Psest_0247 0.22 +0.2
258,033 - Psest_0247 0.22 +2.8
258,060 - Psest_0247 0.24 +1.4

Or see this region's nucleotide sequence