Experiment: Post-colonization (Day 10) - Cage3;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4157 and BT4158 are separated by 6 nucleotides BT4158 and BT4159 are separated by 270 nucleotides
BT4157: BT4157 - alpha-galactosidase precursor (NCBI ptt file), at 5,461,870 to 5,463,690
BT4157
BT4158: BT4158 - hypothetical protein (NCBI ptt file), at 5,463,697 to 5,464,389
BT4158
BT4159: BT4159 - hypothetical protein (NCBI ptt file), at 5,464,660 to 5,466,291
BT4159
Position (kb) 5463
5464
5465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5462.785 kb on - strand, within BT4157 at 5462.894 kb on - strand, within BT4157 at 5462.894 kb on - strand, within BT4157 at 5462.910 kb on + strand, within BT4157 at 5463.023 kb on - strand, within BT4157 at 5463.086 kb on + strand, within BT4157 at 5463.091 kb on - strand, within BT4157 at 5463.257 kb on + strand, within BT4157 at 5463.258 kb on - strand, within BT4157 at 5463.263 kb on + strand, within BT4157 at 5463.341 kb on + strand, within BT4157 at 5463.342 kb on - strand, within BT4157 at 5463.400 kb on - strand, within BT4157 at 5463.628 kb on + strand at 5463.636 kb on + strand at 5463.636 kb on + strand at 5463.637 kb on - strand at 5463.672 kb on + strand at 5463.690 kb on + strand at 5463.771 kb on + strand, within BT4158 at 5463.815 kb on + strand, within BT4158 at 5463.869 kb on - strand, within BT4158 at 5463.925 kb on - strand, within BT4158 at 5463.929 kb on + strand, within BT4158 at 5463.965 kb on - strand, within BT4158 at 5464.024 kb on - strand, within BT4158 at 5464.057 kb on - strand, within BT4158 at 5464.057 kb on - strand, within BT4158 at 5464.057 kb on - strand, within BT4158 at 5464.062 kb on + strand, within BT4158 at 5464.185 kb on - strand, within BT4158 at 5464.217 kb on - strand, within BT4158 at 5464.221 kb on + strand, within BT4158 at 5464.258 kb on + strand, within BT4158 at 5464.259 kb on - strand, within BT4158 at 5464.272 kb on + strand, within BT4158 at 5464.273 kb on - strand, within BT4158 at 5464.318 kb on - strand, within BT4158 at 5464.335 kb on + strand at 5464.387 kb on + strand at 5464.413 kb on - strand at 5464.413 kb on - strand at 5464.454 kb on - strand at 5464.474 kb on - strand at 5464.515 kb on + strand at 5464.516 kb on - strand at 5464.549 kb on - strand at 5464.549 kb on - strand at 5464.582 kb on - strand at 5464.582 kb on - strand at 5464.585 kb on - strand at 5464.673 kb on + strand at 5464.759 kb on - strand at 5464.835 kb on - strand, within BT4159 at 5464.849 kb on - strand, within BT4159 at 5464.860 kb on + strand, within BT4159 at 5464.861 kb on - strand, within BT4159 at 5464.910 kb on - strand, within BT4159 at 5464.986 kb on + strand, within BT4159 at 5465.025 kb on + strand, within BT4159 at 5465.029 kb on - strand, within BT4159 at 5465.029 kb on - strand, within BT4159 at 5465.081 kb on - strand, within BT4159 at 5465.081 kb on - strand, within BT4159 at 5465.122 kb on - strand, within BT4159 at 5465.122 kb on - strand, within BT4159 at 5465.227 kb on + strand, within BT4159 at 5465.228 kb on - strand, within BT4159 at 5465.232 kb on - strand, within BT4159 at 5465.232 kb on - strand, within BT4159 at 5465.232 kb on - strand, within BT4159 at 5465.232 kb on - strand, within BT4159 at 5465.361 kb on + strand, within BT4159 at 5465.369 kb on - strand, within BT4159
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage3;Mouse4 remove 5,462,785 - BT4157 0.50 +1.0 5,462,894 - BT4157 0.56 -1.0 5,462,894 - BT4157 0.56 +0.3 5,462,910 + BT4157 0.57 -2.9 5,463,023 - BT4157 0.63 +0.7 5,463,086 + BT4157 0.67 -0.4 5,463,091 - BT4157 0.67 -0.4 5,463,257 + BT4157 0.76 +0.4 5,463,258 - BT4157 0.76 -0.6 5,463,263 + BT4157 0.76 +0.2 5,463,341 + BT4157 0.81 -1.4 5,463,342 - BT4157 0.81 -0.0 5,463,400 - BT4157 0.84 -0.5 5,463,628 + -0.3 5,463,636 + +2.5 5,463,636 + -0.6 5,463,637 - +0.3 5,463,672 + -0.7 5,463,690 + -0.5 5,463,771 + BT4158 0.11 -0.3 5,463,815 + BT4158 0.17 -0.6 5,463,869 - BT4158 0.25 +1.0 5,463,925 - BT4158 0.33 -0.5 5,463,929 + BT4158 0.33 -1.5 5,463,965 - BT4158 0.39 -1.7 5,464,024 - BT4158 0.47 -0.6 5,464,057 - BT4158 0.52 -2.4 5,464,057 - BT4158 0.52 -1.2 5,464,057 - BT4158 0.52 -2.4 5,464,062 + BT4158 0.53 -1.5 5,464,185 - BT4158 0.70 -1.8 5,464,217 - BT4158 0.75 -1.4 5,464,221 + BT4158 0.76 -1.7 5,464,258 + BT4158 0.81 -2.5 5,464,259 - BT4158 0.81 -1.6 5,464,272 + BT4158 0.83 -1.6 5,464,273 - BT4158 0.83 -2.2 5,464,318 - BT4158 0.90 -0.6 5,464,335 + -1.2 5,464,387 + -0.8 5,464,413 - +1.4 5,464,413 - -2.8 5,464,454 - -1.6 5,464,474 - -0.2 5,464,515 + -0.5 5,464,516 - -0.3 5,464,549 - +0.1 5,464,549 - +0.7 5,464,582 - -2.2 5,464,582 - -2.0 5,464,585 - -0.8 5,464,673 + -1.8 5,464,759 - +0.5 5,464,835 - BT4159 0.11 -0.7 5,464,849 - BT4159 0.12 -0.8 5,464,860 + BT4159 0.12 -0.3 5,464,861 - BT4159 0.12 -0.0 5,464,910 - BT4159 0.15 -1.2 5,464,986 + BT4159 0.20 -1.2 5,465,025 + BT4159 0.22 -1.4 5,465,029 - BT4159 0.23 -1.2 5,465,029 - BT4159 0.23 -0.9 5,465,081 - BT4159 0.26 +0.7 5,465,081 - BT4159 0.26 -0.6 5,465,122 - BT4159 0.28 -0.8 5,465,122 - BT4159 0.28 -1.0 5,465,227 + BT4159 0.35 -0.9 5,465,228 - BT4159 0.35 +0.4 5,465,232 - BT4159 0.35 -1.6 5,465,232 - BT4159 0.35 -1.2 5,465,232 - BT4159 0.35 +0.7 5,465,232 - BT4159 0.35 -2.5 5,465,361 + BT4159 0.43 -1.0 5,465,369 - BT4159 0.43 -0.6
Or see this region's nucleotide sequence