Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2920

Experiment: Post-colonization (Day 10) - Cage3;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 10) - Cage3;Mouse4
3,661,830	-		BT2919	0.51	-1.1
3,661,868	+		BT2919	0.53	-0.7
3,661,887	-		BT2919	0.54	-1.2
3,661,887	-		BT2919	0.54	+0.5
3,661,887	-		BT2919	0.54	-0.8
3,661,888	+		BT2919	0.54	-1.8
3,661,889	-		BT2919	0.54	+0.7
3,661,957	-		BT2919	0.57	+0.8
3,662,051	+		BT2919	0.62	-0.8
3,662,091	+		BT2919	0.64	-1.8
3,662,093	+		BT2919	0.64	-2.1
3,662,115	-		BT2919	0.65	-0.9
3,662,150	+		BT2919	0.67	+0.4
3,662,192	+		BT2919	0.69	-0.0
3,662,201	-		BT2919	0.70	+0.9
3,662,217	+		BT2919	0.71	+0.5
3,662,217	+		BT2919	0.71	-1.1
3,662,268	-		BT2919	0.73	-0.4
3,662,296	+		BT2919	0.75	-0.2
3,662,296	+		BT2919	0.75	+0.9
3,662,315	-		BT2919	0.76	-1.5
3,662,320	+		BT2919	0.76	+0.2
3,662,320	+		BT2919	0.76	-2.1
3,662,324	-		BT2919	0.76	+0.9
3,662,324	-		BT2919	0.76	-1.6
3,662,324	-		BT2919	0.76	+0.9
3,662,434	+		BT2919	0.82	-1.2
3,662,507	+		BT2919	0.86	+0.4
3,662,508	-		BT2919	0.86	-1.7
3,662,508	-		BT2919	0.86	-2.6
3,662,558	+		BT2919	0.88	-0.3
3,662,562	-		BT2919	0.89	+1.2
3,662,564	-		BT2919	0.89	+0.9
3,662,604	+				+0.3
3,662,605	-				-1.8
3,662,626	+				-0.8
3,662,637	-				+1.9
3,662,794	+				-0.1
3,662,819	+				-1.4
3,662,821	+				-2.5
3,662,840	-				-3.4
3,662,948	+				-1.5
3,662,953	-				-2.1
3,662,953	-				-1.7
3,662,969	+				+0.5
3,662,969	+				-0.3
3,663,035	+				-1.2
3,663,041	+				-2.6
3,663,063	+				+0.3
3,663,093	-				-2.9
3,663,093	-				-2.5
3,663,096	-				-1.7
3,663,140	+		BT2920	0.11	-0.5
3,663,160	-		BT2920	0.11	-2.1
3,663,160	-		BT2920	0.11	-0.1
3,663,183	-		BT2920	0.12	-3.8
3,663,252	+		BT2920	0.14	-1.5
3,663,252	+		BT2920	0.14	-1.2
3,663,252	+		BT2920	0.14	-0.5
3,663,252	+		BT2920	0.14	-1.5
3,663,252	+		BT2920	0.14	-0.5
3,663,253	-		BT2920	0.14	-3.4
3,663,255	-		BT2920	0.14	-0.1
3,663,268	+		BT2920	0.15	-1.9
3,663,294	+		BT2920	0.16	-1.7
3,663,363	+		BT2920	0.18	-3.4
3,663,409	-		BT2920	0.19	-1.1
3,663,419	+		BT2920	0.20	-0.9
3,663,438	+		BT2920	0.20	-0.6
3,663,458	+		BT2920	0.21	-0.1
3,663,458	+		BT2920	0.21	+0.1
3,663,460	+		BT2920	0.21	-1.4
3,663,460	+		BT2920	0.21	-0.8
3,663,461	-		BT2920	0.21	-1.5
3,663,485	-		BT2920	0.22	-2.6
3,663,523	+		BT2920	0.23	+0.7
3,663,539	+		BT2920	0.23	-0.7
3,663,541	+		BT2920	0.23	+0.1
3,663,542	-		BT2920	0.23	-1.4
3,663,557	-		BT2920	0.24	-3.6
3,663,561	-		BT2920	0.24	-0.7
3,663,605	+		BT2920	0.25	-1.1
3,663,608	+		BT2920	0.26	-0.6
3,663,641	+		BT2920	0.27	-0.1
3,663,683	+		BT2920	0.28	-1.0
3,663,695	+		BT2920	0.28	-1.1
3,663,735	-		BT2920	0.29	-2.3
3,663,736	+		BT2920	0.30	-1.1
3,663,798	-		BT2920	0.31	-2.7
3,663,863	-		BT2920	0.33	-2.0
3,663,892	+		BT2920	0.34	-0.8
3,663,896	+		BT2920	0.35	-1.3
3,663,899	+		BT2920	0.35	-1.5
3,663,914	+		BT2920	0.35	-1.0
3,663,964	-		BT2920	0.37	-1.9
3,663,965	+		BT2920	0.37	-0.9
3,663,970	+		BT2920	0.37	-4.1
3,663,970	+		BT2920	0.37	-0.7
3,663,970	+		BT2920	0.37	-1.8
3,663,971	-		BT2920	0.37	-3.2
3,664,107	-		BT2920	0.41	-1.5
3,664,142	+		BT2920	0.42	-0.7
3,664,142	+		BT2920	0.42	-0.4
3,664,143	-		BT2920	0.42	-1.7
3,664,143	-		BT2920	0.42	-2.1
3,664,144	+		BT2920	0.42	-1.4
3,664,144	+		BT2920	0.42	-2.1
3,664,227	-		BT2920	0.45	+0.5
3,664,258	-		BT2920	0.46	-0.9
3,664,304	+		BT2920	0.47	+0.9
3,664,306	+		BT2920	0.47	-1.1
3,664,306	+		BT2920	0.47	-0.6
3,664,307	-		BT2920	0.47	-1.9
3,664,310	+		BT2920	0.47	-1.8
3,664,310	+		BT2920	0.47	+0.5
3,664,313	+		BT2920	0.48	-1.4
3,664,314	-		BT2920	0.48	+0.3
3,664,376	+		BT2920	0.50	-1.9
3,664,376	+		BT2920	0.50	-0.8
3,664,405	+		BT2920	0.50	-0.7
3,664,416	-		BT2920	0.51	-0.7
3,664,427	-		BT2920	0.51	-2.1
3,664,488	+		BT2920	0.53	-0.7
3,664,500	+		BT2920	0.53	+0.2
3,664,501	-		BT2920	0.53	-1.6
3,664,609	+		BT2920	0.57	-0.6
3,664,641	-		BT2920	0.58	-0.6
3,664,646	+		BT2920	0.58	-1.9
3,664,646	+		BT2920	0.58	-1.2
3,664,652	-		BT2920	0.58	-0.0
3,664,719	-		BT2920	0.60	-0.5
3,664,738	+		BT2920	0.61	+1.6
3,664,739	-		BT2920	0.61	-2.0
3,664,739	-		BT2920	0.61	-1.3
3,664,739	-		BT2920	0.61	-0.9
3,664,751	+		BT2920	0.61	-1.4
3,664,753	+		BT2920	0.61	-1.9
3,664,754	-		BT2920	0.61	-0.3
3,664,800	-		BT2920	0.63	-0.7
3,664,809	-		BT2920	0.63	-3.0
3,664,809	-		BT2920	0.63	-1.3
3,664,874	+		BT2920	0.65	-1.2
3,664,875	-		BT2920	0.65	-1.9
3,664,875	-		BT2920	0.65	-1.0
3,664,875	-		BT2920	0.65	-2.2
3,664,906	+		BT2920	0.66	-1.6
3,664,921	+		BT2920	0.67	+0.1
3,664,922	-		BT2920	0.67	-1.5
3,664,924	+		BT2920	0.67	-1.7
3,664,925	-		BT2920	0.67	-0.1
3,664,949	+		BT2920	0.67	-1.8
3,664,952	+		BT2920	0.68	-1.7
3,665,048	+		BT2920	0.71	-0.5
3,665,048	+		BT2920	0.71	-1.1
3,665,055	+		BT2920	0.71	-1.5
3,665,072	-		BT2920	0.71	-1.3
3,665,093	+		BT2920	0.72	+0.7
3,665,126	+		BT2920	0.73	-0.0
3,665,127	-		BT2920	0.73	-0.7
3,665,128	+		BT2920	0.73	-1.1
3,665,129	-		BT2920	0.73	-0.5
3,665,241	-		BT2920	0.77	-2.9
3,665,282	+		BT2920	0.78	+0.2
3,665,282	+		BT2920	0.78	-0.5
3,665,283	-		BT2920	0.78	-1.3
3,665,547	-		BT2920	0.86	-0.2
3,665,637	+		BT2920	0.89	-0.5
3,665,678	-				-0.7
3,665,678	-				-0.5
3,665,682	+				-1.1
3,665,683	-				-0.8
3,665,683	-				+0.6
3,665,683	-				-0.4
3,665,729	+				-1.2
3,665,735	+				-1.0
3,665,735	+				-2.7
3,665,736	-				+0.3
3,665,782	-				+0.7
3,665,798	+				-0.3
3,665,814	-				-1.7
3,665,831	+				+0.5
3,665,832	-				-0.7
3,665,861	+				-0.8
3,665,885	-				-0.7
3,665,925	+				-0.1
3,665,991	+				+0.9
3,665,997	+				-1.7
3,666,050	+				+0.0
3,666,058	-				-1.7
3,666,058	-				-1.5
3,666,114	+		BT2921	0.10	-1.1
3,666,141	+		BT2921	0.13	-0.1
3,666,183	+		BT2921	0.16	+0.3
3,666,200	+		BT2921	0.18	+0.1
3,666,201	-		BT2921	0.18	-1.9
3,666,211	+		BT2921	0.19	-1.6
3,666,232	-		BT2921	0.21	-1.8
3,666,270	+		BT2921	0.24	+0.2
3,666,356	-		BT2921	0.32	-1.7
3,666,401	+		BT2921	0.37	-2.5
3,666,436	+		BT2921	0.40	-0.7
3,666,504	+		BT2921	0.46	-1.8
3,666,588	+		BT2921	0.54	-0.0
3,666,609	+		BT2921	0.56	-1.8
3,666,625	+		BT2921	0.57	+0.9
3,666,629	+		BT2921	0.58	-0.1
3,666,630	-		BT2921	0.58	-1.6
3,666,681	-		BT2921	0.62	-4.1
3,666,681	-		BT2921	0.62	-1.7
3,666,731	-		BT2921	0.67	-3.0
3,666,766	-		BT2921	0.70	-2.4
3,666,769	+		BT2921	0.71	-0.3
3,666,770	-		BT2921	0.71	+0.2
3,666,770	-		BT2921	0.71	-1.8
3,666,770	-		BT2921	0.71	+0.9
3,666,777	+		BT2921	0.71	-0.3
3,666,777	+		BT2921	0.71	-2.3
3,666,777	+		BT2921	0.71	-0.3
3,666,777	+		BT2921	0.71	-0.4
3,666,778	-		BT2921	0.71	+0.9
3,666,788	+		BT2921	0.72	-1.3
3,666,868	-		BT2921	0.80	-3.8
3,666,888	+		BT2921	0.82	-0.0
3,666,888	+		BT2921	0.82	-0.7
3,666,953	+		BT2921	0.88	-1.6