Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0930

Experiment: L-tyrosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine
1,007,244	-				+0.3
1,007,284	+				-1.2
1,007,285	-				-1.1
1,007,285	-				-0.3
1,007,285	-				-0.6
1,007,285	-				-1.0
1,007,285	-				+1.3
1,007,404	+				-0.8
1,007,404	+				-1.8
1,007,405	-				-0.9
1,007,453	+				+4.3
1,007,453	+				-0.4
1,007,470	+		Psest_0929	0.12	-2.5
1,007,471	-		Psest_0929	0.12	+1.3
1,007,471	-		Psest_0929	0.12	-1.5
1,007,471	-		Psest_0929	0.12	+0.3
1,007,578	+		Psest_0929	0.25	-1.0
1,007,578	+		Psest_0929	0.25	-0.7
1,007,578	+		Psest_0929	0.25	-0.5
1,007,591	-		Psest_0929	0.27	+0.2
1,007,623	+		Psest_0929	0.31	-1.0
1,007,632	+		Psest_0929	0.32	+0.6
1,007,656	+		Psest_0929	0.35	+0.1
1,007,656	+		Psest_0929	0.35	+0.0
1,007,656	+		Psest_0929	0.35	+2.0
1,007,656	+		Psest_0929	0.35	-1.6
1,007,656	+		Psest_0929	0.35	+0.7
1,007,657	-		Psest_0929	0.36	-0.2
1,007,657	-		Psest_0929	0.36	-0.2
1,007,657	-		Psest_0929	0.36	-3.8
1,007,657	-		Psest_0929	0.36	+0.8
1,007,657	-		Psest_0929	0.36	-1.0
1,007,676	-		Psest_0929	0.38	+0.5
1,007,855	-		Psest_0929	0.61	-1.1
1,008,015	+		Psest_0929	0.81	-1.6
1,008,016	-		Psest_0929	0.82	-0.0
1,008,167	-				+1.6
1,008,167	-				+0.3
1,008,219	-				+0.3
1,008,219	-				-1.7
1,008,343	+		Psest_0930	0.24	+1.9
1,008,343	+		Psest_0930	0.24	+2.2
1,008,344	-		Psest_0930	0.24	-1.9
1,008,344	-		Psest_0930	0.24	+0.4
1,008,385	+		Psest_0930	0.30	-2.1
1,008,385	+		Psest_0930	0.30	+1.5
1,008,386	-		Psest_0930	0.30	+0.1
1,008,395	+		Psest_0930	0.32	+0.6
1,008,395	+		Psest_0930	0.32	-0.7
1,008,395	+		Psest_0930	0.32	+3.8
1,008,395	+		Psest_0930	0.32	+0.3
1,008,395	+		Psest_0930	0.32	-1.0
1,008,396	-		Psest_0930	0.32	+1.5
1,008,396	-		Psest_0930	0.32	-0.3
1,008,396	-		Psest_0930	0.32	+2.3
1,008,396	-		Psest_0930	0.32	-1.3
1,008,483	+		Psest_0930	0.45	-0.3
1,008,483	+		Psest_0930	0.45	+0.8
1,008,483	+		Psest_0930	0.45	-1.8
1,008,484	-		Psest_0930	0.45	+1.7
1,008,484	-		Psest_0930	0.45	+2.5
1,008,484	-		Psest_0930	0.45	+0.4
1,008,557	+		Psest_0930	0.56	-1.8
1,008,561	+		Psest_0930	0.57	+0.5
1,008,561	+		Psest_0930	0.57	+0.6
1,008,561	+		Psest_0930	0.57	-2.3
1,008,562	-		Psest_0930	0.57	-0.4
1,008,562	-		Psest_0930	0.57	-0.4
1,008,562	-		Psest_0930	0.57	+0.2
1,008,562	-		Psest_0930	0.57	-0.9
1,008,617	+		Psest_0930	0.66	+3.1
1,008,617	+		Psest_0930	0.66	+1.7
1,008,617	+		Psest_0930	0.66	+0.4
1,008,617	+		Psest_0930	0.66	+0.4
1,008,617	+		Psest_0930	0.66	+0.7
1,008,617	+		Psest_0930	0.66	+1.0
1,008,617	+		Psest_0930	0.66	+2.6
1,008,617	+		Psest_0930	0.66	-1.4
1,008,617	+		Psest_0930	0.66	+0.9
1,008,618	-		Psest_0930	0.66	-1.3
1,008,618	-		Psest_0930	0.66	+1.6
1,008,618	-		Psest_0930	0.66	+1.1
1,008,618	-		Psest_0930	0.66	-0.1
1,008,618	-		Psest_0930	0.66	-0.5
1,008,618	-		Psest_0930	0.66	+1.6
1,008,618	-		Psest_0930	0.66	-1.0
1,008,618	-		Psest_0930	0.66	+1.1
1,008,618	-		Psest_0930	0.66	-2.4
1,008,736	+		Psest_0930	0.84	-1.3
1,008,835	+				+2.1
1,008,835	+				-0.3
1,008,835	+				+1.1
1,008,835	+				+1.3
1,008,835	+				+0.8
1,008,836	-				-0.1
1,008,836	-				-0.7
1,008,839	+				-0.4
1,008,857	-				-0.4
1,008,942	+				+0.6
1,008,994	-				+1.7
1,009,057	+				-0.6
1,009,059	+				-2.0
1,009,060	-				-1.5
1,009,090	+				-0.7
1,009,090	+				+0.3
1,009,090	+				-0.9
1,009,091	-				-1.2
1,009,091	-				-1.8
1,009,119	+				-0.4
1,009,119	+				-0.8
1,009,119	+				+0.4
1,009,120	-				+2.3
1,009,120	-				-0.8
1,009,120	-				+1.5
1,009,120	-				+1.9
1,009,120	-				-1.3
1,009,120	-				-0.3
1,009,123	+				-0.2
1,009,123	+				-0.1
1,009,124	-				-0.3
1,009,124	-				+2.4
1,009,183	+		Psest_0931	0.11	-2.4
1,009,238	+		Psest_0931	0.17	+0.4
1,009,238	+		Psest_0931	0.17	+0.1
1,009,238	+		Psest_0931	0.17	+1.1
1,009,238	+		Psest_0931	0.17	-0.6
1,009,239	-		Psest_0931	0.17	-0.4
1,009,239	-		Psest_0931	0.17	-1.3
1,009,239	-		Psest_0931	0.17	-1.6
1,009,239	-		Psest_0931	0.17	+1.3
1,009,273	+		Psest_0931	0.20	-0.6
1,009,273	+		Psest_0931	0.20	-0.5
1,009,273	+		Psest_0931	0.20	+1.2
1,009,273	+		Psest_0931	0.20	+0.0
1,009,273	+		Psest_0931	0.20	+0.3
1,009,273	+		Psest_0931	0.20	+0.7
1,009,274	-		Psest_0931	0.20	+0.3
1,009,274	-		Psest_0931	0.20	+1.8
1,009,274	-		Psest_0931	0.20	+0.2
1,009,274	-		Psest_0931	0.20	+0.4
1,009,274	-		Psest_0931	0.20	+0.7
1,009,274	-		Psest_0931	0.20	-0.3
1,009,274	-		Psest_0931	0.20	+0.9
1,009,327	+		Psest_0931	0.26	-0.7
1,009,327	+		Psest_0931	0.26	-1.6
1,009,372	+		Psest_0931	0.30	+1.2
1,009,372	+		Psest_0931	0.30	-2.1
1,009,372	+		Psest_0931	0.30	-1.2
1,009,372	+		Psest_0931	0.30	-0.6
1,009,372	+		Psest_0931	0.30	-0.7
1,009,373	-		Psest_0931	0.30	-0.7
1,009,373	-		Psest_0931	0.30	+0.2
1,009,378	-		Psest_0931	0.31	+0.3
1,009,387	-		Psest_0931	0.32	+0.8
1,009,387	-		Psest_0931	0.32	+1.5
1,009,387	-		Psest_0931	0.32	-1.5
1,009,476	+		Psest_0931	0.41	+0.7
1,009,499	+		Psest_0931	0.43	-0.8
1,009,500	-		Psest_0931	0.43	-1.8
1,009,606	+		Psest_0931	0.54	-1.2
1,009,669	-		Psest_0931	0.60	-0.4
1,009,669	-		Psest_0931	0.60	-1.8
1,009,669	-		Psest_0931	0.60	+1.0
1,009,685	-		Psest_0931	0.62	+0.7
1,009,787	-		Psest_0931	0.72	+1.3
1,009,802	-		Psest_0931	0.74	+0.2
1,009,826	+		Psest_0931	0.76	+0.4
1,009,827	-		Psest_0931	0.76	-0.3