Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0711 and Psest_0712 are separated by 196 nucleotides Psest_0712 and Psest_0713 are separated by 9 nucleotides Psest_0713 and Psest_0714 are separated by 5 nucleotides Psest_0714 and Psest_0715 are separated by 113 nucleotides Psest_0715 and Psest_0716 are separated by 53 nucleotides Psest_0716 and Psest_0717 are separated by 121 nucleotides
Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917
_0711
Psest_0712: Psest_0712 - tRNA_Asn_GTT, at 783,114 to 783,189
_0712
Psest_0713: Psest_0713 - tRNA_Pro_TGG, at 783,199 to 783,275
_0713
Psest_0714: Psest_0714 - tRNA_Lys_TTT, at 783,281 to 783,356
_0714
Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765
_0715
Psest_0716: Psest_0716 - Protein of unknown function (DUF3094)., at 784,819 to 784,992
_0716
Psest_0717: Psest_0717 - Protein of unknown function (DUF1631)., at 785,114 to 787,372
_0717
Position (kb) 783
784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 782.924 kb on + strand at 782.924 kb on + strand at 783.013 kb on + strand at 783.014 kb on - strand at 783.030 kb on - strand at 783.357 kb on + strand at 783.357 kb on + strand at 783.357 kb on + strand at 783.535 kb on + strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.583 kb on + strand at 783.583 kb on + strand at 783.584 kb on - strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.702 kb on + strand, within Psest_0715 at 784.046 kb on + strand, within Psest_0715 at 784.116 kb on - strand, within Psest_0715 at 784.179 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.749 kb on - strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.946 kb on + strand, within Psest_0716 at 784.946 kb on + strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.992 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.025 kb on + strand at 785.026 kb on - strand at 785.026 kb on - strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.717 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 782,924 + -0.7 782,924 + +0.7 783,013 + -0.7 783,014 - +0.9 783,030 - -0.3 783,357 + +2.0 783,357 + +4.0 783,357 + +0.2 783,535 + -1.6 783,550 - -0.7 783,550 - -2.2 783,550 - -1.2 783,550 - +1.5 783,550 - -1.8 783,550 - +2.4 783,583 + -0.1 783,583 + -0.4 783,584 - -0.2 783,585 + -1.2 783,585 + -0.6 783,585 + -2.9 783,585 + +1.1 783,585 + -2.4 783,585 + -1.2 783,586 - -1.5 783,586 - -1.0 783,586 - -2.3 783,586 - -0.3 783,586 - -1.2 783,586 - -1.5 783,586 - -1.0 783,586 - -1.1 783,586 - -0.8 783,586 - -2.0 783,586 - +0.1 783,696 + Psest_0715 0.17 -0.4 783,696 + Psest_0715 0.17 -1.7 783,696 + Psest_0715 0.17 -2.0 783,696 + Psest_0715 0.17 -0.2 783,702 + Psest_0715 0.18 -1.3 784,046 + Psest_0715 0.44 +0.5 784,116 - Psest_0715 0.50 +0.5 784,179 + Psest_0715 0.55 -0.6 784,300 + Psest_0715 0.64 +1.0 784,300 + Psest_0715 0.64 -1.6 784,300 + Psest_0715 0.64 +0.3 784,300 + Psest_0715 0.64 +0.5 784,300 + Psest_0715 0.64 -0.6 784,300 + Psest_0715 0.64 -0.9 784,300 + Psest_0715 0.64 -1.2 784,300 + Psest_0715 0.64 -0.9 784,300 + Psest_0715 0.64 -0.4 784,300 + Psest_0715 0.64 -1.6 784,301 - Psest_0715 0.64 +0.1 784,301 - Psest_0715 0.64 -0.2 784,301 - Psest_0715 0.64 -0.2 784,301 - Psest_0715 0.64 -3.8 784,301 - Psest_0715 0.64 +0.2 784,301 - Psest_0715 0.64 -2.1 784,301 - Psest_0715 0.64 -2.1 784,301 - Psest_0715 0.64 -0.5 784,301 - Psest_0715 0.64 -2.2 784,301 - Psest_0715 0.64 -0.2 784,301 - Psest_0715 0.64 +0.4 784,301 - Psest_0715 0.64 -0.6 784,302 + Psest_0715 0.64 +0.2 784,302 + Psest_0715 0.64 -1.8 784,302 + Psest_0715 0.64 +0.2 784,302 + Psest_0715 0.64 +0.1 784,302 + Psest_0715 0.64 +0.3 784,302 + Psest_0715 0.64 -2.0 784,302 + Psest_0715 0.64 -1.2 784,302 + Psest_0715 0.64 +2.2 784,303 - Psest_0715 0.64 -2.0 784,303 - Psest_0715 0.64 -1.2 784,431 + Psest_0715 0.74 -1.4 784,431 + Psest_0715 0.74 +0.2 784,431 + Psest_0715 0.74 -0.3 784,432 - Psest_0715 0.74 -0.6 784,432 - Psest_0715 0.74 -1.6 784,432 - Psest_0715 0.74 -0.0 784,432 - Psest_0715 0.74 -1.3 784,432 - Psest_0715 0.74 -0.7 784,432 - Psest_0715 0.74 -1.2 784,432 - Psest_0715 0.74 -2.3 784,572 + Psest_0715 0.85 -0.2 784,572 + Psest_0715 0.85 -0.0 784,572 + Psest_0715 0.85 -1.7 784,572 + Psest_0715 0.85 -1.3 784,572 + Psest_0715 0.85 +0.3 784,573 - Psest_0715 0.85 -1.5 784,573 - Psest_0715 0.85 +0.8 784,573 - Psest_0715 0.85 -1.0 784,573 - Psest_0715 0.85 -0.2 784,573 - Psest_0715 0.85 -2.3 784,573 - Psest_0715 0.85 -0.6 784,573 - Psest_0715 0.85 -2.1 784,573 - Psest_0715 0.85 -0.8 784,573 - Psest_0715 0.85 -2.1 784,573 - Psest_0715 0.85 -2.3 784,573 - Psest_0715 0.85 -0.6 784,573 - Psest_0715 0.85 -1.3 784,573 - Psest_0715 0.85 +0.4 784,573 - Psest_0715 0.85 -0.3 784,749 - -0.6 784,778 + -0.7 784,778 + -1.5 784,778 + -0.2 784,778 + -0.2 784,778 + -0.4 784,779 - -1.5 784,779 - -1.5 784,779 - -0.4 784,779 - +0.9 784,946 + Psest_0716 0.73 -0.3 784,946 + Psest_0716 0.73 -1.3 784,947 - Psest_0716 0.74 -2.1 784,947 - Psest_0716 0.74 -1.3 784,992 + -0.4 785,021 + +0.5 785,021 + -0.5 785,021 + -2.1 785,021 + -0.9 785,021 + -0.1 785,022 - +0.7 785,022 - -0.6 785,022 - +1.7 785,022 - +1.9 785,022 - -0.8 785,022 - +0.1 785,022 - -0.5 785,025 + -0.6 785,026 - +0.7 785,026 - +0.4 785,277 + +0.5 785,277 + +1.2 785,277 + -0.2 785,277 + -1.5 785,277 + -0.7 785,277 + +0.3 785,277 + +0.8 785,277 + -0.2 785,277 + +0.5 785,277 + -0.6 785,277 + +0.5 785,277 + +1.3 785,277 + +0.8 785,278 - -0.4 785,278 - +0.8 785,278 - -1.5 785,278 - +0.5 785,278 - -0.0 785,717 + Psest_0717 0.27 -0.4 785,737 + Psest_0717 0.28 -0.9 785,737 + Psest_0717 0.28 +1.6 785,737 + Psest_0717 0.28 -2.3 785,738 - Psest_0717 0.28 -1.5 785,738 - Psest_0717 0.28 -0.2 785,738 - Psest_0717 0.28 +0.2 785,738 - Psest_0717 0.28 +0.4 785,738 - Psest_0717 0.28 +1.7 785,738 - Psest_0717 0.28 +1.8 785,738 - Psest_0717 0.28 +0.9 785,738 - Psest_0717 0.28 +0.4 785,738 - Psest_0717 0.28 -0.1 785,738 - Psest_0717 0.28 -0.0 785,738 - Psest_0717 0.28 +0.0 785,738 - Psest_0717 0.28 +0.4
Or see this region's nucleotide sequence