Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0843 and Psest_0844 overlap by 4 nucleotides Psest_0844 and Psest_0845 are separated by 16 nucleotides Psest_0845 and Psest_0846 overlap by 1 nucleotides
Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604
_0843
Psest_0844: Psest_0844 - High-affinity Fe2+/Pb2+ permease, at 914,601 to 915,458
_0844
Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813
_0845
Psest_0846: Psest_0846 - Uncharacterized protein probably involved in high-affinity Fe2+ transport, at 915,813 to 916,346
_0846
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 913.608 kb on + strand, within Psest_0843 at 913.608 kb on + strand, within Psest_0843 at 913.609 kb on - strand, within Psest_0843 at 913.609 kb on - strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.897 kb on + strand, within Psest_0843 at 913.898 kb on - strand, within Psest_0843 at 914.048 kb on + strand, within Psest_0843 at 914.048 kb on + strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.208 kb on - strand, within Psest_0843 at 914.229 kb on - strand, within Psest_0843 at 914.507 kb on + strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.817 kb on + strand, within Psest_0844 at 914.818 kb on - strand, within Psest_0844 at 915.046 kb on + strand, within Psest_0844 at 915.047 kb on - strand, within Psest_0844 at 915.223 kb on - strand, within Psest_0844 at 915.288 kb on + strand, within Psest_0844 at 915.473 kb on + strand at 915.474 kb on - strand at 915.474 kb on - strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.729 kb on - strand, within Psest_0845 at 915.857 kb on - strand at 915.955 kb on + strand, within Psest_0846 at 915.955 kb on + strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.967 kb on + strand, within Psest_0846 at 916.081 kb on + strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 913,608 + Psest_0843 0.28 -0.6 913,608 + Psest_0843 0.28 +0.2 913,609 - Psest_0843 0.28 -1.6 913,609 - Psest_0843 0.28 +0.3 913,610 + Psest_0843 0.28 -0.6 913,610 + Psest_0843 0.28 +1.8 913,610 + Psest_0843 0.28 -1.0 913,610 + Psest_0843 0.28 +0.3 913,610 + Psest_0843 0.28 +0.3 913,610 + Psest_0843 0.28 +2.3 913,610 + Psest_0843 0.28 +1.5 913,610 + Psest_0843 0.28 +0.6 913,610 + Psest_0843 0.28 +0.9 913,611 - Psest_0843 0.28 +2.2 913,611 - Psest_0843 0.28 -1.5 913,611 - Psest_0843 0.28 +1.3 913,611 - Psest_0843 0.28 -0.2 913,611 - Psest_0843 0.28 -0.5 913,611 - Psest_0843 0.28 -1.9 913,611 - Psest_0843 0.28 -0.8 913,611 - Psest_0843 0.28 +0.9 913,611 - Psest_0843 0.28 +1.8 913,897 + Psest_0843 0.49 -0.7 913,898 - Psest_0843 0.49 -0.5 914,048 + Psest_0843 0.60 +0.1 914,048 + Psest_0843 0.60 -0.5 914,049 - Psest_0843 0.60 -0.2 914,049 - Psest_0843 0.60 +1.9 914,049 - Psest_0843 0.60 -0.4 914,049 - Psest_0843 0.60 -0.2 914,049 - Psest_0843 0.60 +1.1 914,201 + Psest_0843 0.71 -0.3 914,201 + Psest_0843 0.71 -3.2 914,201 + Psest_0843 0.71 -0.7 914,201 + Psest_0843 0.71 -0.9 914,202 - Psest_0843 0.71 -1.7 914,202 - Psest_0843 0.71 +0.3 914,202 - Psest_0843 0.71 -0.7 914,207 + Psest_0843 0.71 -1.0 914,207 + Psest_0843 0.71 +1.7 914,207 + Psest_0843 0.71 +1.6 914,207 + Psest_0843 0.71 +1.4 914,207 + Psest_0843 0.71 -0.8 914,208 - Psest_0843 0.71 +2.7 914,229 - Psest_0843 0.73 -0.2 914,507 + -2.4 914,508 - +1.5 914,508 - -1.7 914,508 - +0.3 914,508 - +1.1 914,508 - -0.2 914,803 + Psest_0844 0.24 +0.3 914,803 + Psest_0844 0.24 +0.0 914,803 + Psest_0844 0.24 +1.2 914,803 + Psest_0844 0.24 +0.1 914,817 + Psest_0844 0.25 -1.5 914,818 - Psest_0844 0.25 -1.7 915,046 + Psest_0844 0.52 +2.7 915,047 - Psest_0844 0.52 +0.7 915,223 - Psest_0844 0.72 +1.3 915,288 + Psest_0844 0.80 +1.9 915,473 + -2.0 915,474 - +0.9 915,474 - -0.7 915,476 + -2.5 915,476 + +0.4 915,476 + -0.4 915,476 + -1.5 915,477 - +3.5 915,477 - +0.3 915,477 - -0.2 915,729 - Psest_0845 0.75 -1.1 915,857 - -1.7 915,955 + Psest_0846 0.27 +1.6 915,955 + Psest_0846 0.27 +0.3 915,956 - Psest_0846 0.27 +0.1 915,956 - Psest_0846 0.27 -1.5 915,967 + Psest_0846 0.29 +0.5 916,081 + Psest_0846 0.50 +0.4 916,082 - Psest_0846 0.50 +1.3 916,082 - Psest_0846 0.50 -0.0 916,455 + +0.5
Or see this region's nucleotide sequence