Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0568

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0567 and Psest_0568 are separated by 319 nucleotidesPsest_0568 and Psest_0569 are separated by 21 nucleotidesPsest_0569 and Psest_0570 are separated by 174 nucleotidesPsest_0570 and Psest_0571 are separated by 160 nucleotides Psest_0567: Psest_0567 - urea ABC transporter, urea binding protein, at 623,422 to 624,690 _0567 Psest_0568: Psest_0568 - pseudouridine synthase, at 625,010 to 625,639 _0568 Psest_0569: Psest_0569 - Protein of unknown function (DUF2788)., at 625,661 to 625,879 _0569 Psest_0570: Psest_0570 - hypothetical protein, at 626,054 to 626,446 _0570 Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086 _0571 Position (kb) 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.156 kb on - strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.264 kb on - strand, within Psest_0567at 624.264 kb on - strand, within Psest_0567at 624.296 kb on + strand, within Psest_0567at 624.297 kb on - strand, within Psest_0567at 624.308 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.935 kb on + strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.981 kb on - strandat 625.058 kb on - strandat 625.307 kb on + strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.428 kb on + strand, within Psest_0568at 625.429 kb on - strand, within Psest_0568at 625.638 kb on - strandat 625.944 kb on - strandat 625.944 kb on - strandat 625.944 kb on - strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 626.160 kb on - strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.182 kb on - strand, within Psest_0570at 626.197 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.415 kb on + strandat 626.416 kb on - strandat 626.558 kb on + strandat 626.559 kb on - strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.561 kb on - strandat 626.561 kb on - strandat 626.582 kb on + strandat 626.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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624,077 + Psest_0567 0.52 +1.8
624,077 + Psest_0567 0.52 +0.7
624,077 + Psest_0567 0.52 +0.4
624,078 - Psest_0567 0.52 -0.3
624,078 - Psest_0567 0.52 +0.4
624,156 - Psest_0567 0.58 -2.3
624,161 + Psest_0567 0.58 +2.7
624,161 + Psest_0567 0.58 +0.4
624,161 + Psest_0567 0.58 -1.1
624,162 - Psest_0567 0.58 -0.9
624,162 - Psest_0567 0.58 +0.4
624,162 - Psest_0567 0.58 -1.3
624,162 - Psest_0567 0.58 -2.2
624,162 - Psest_0567 0.58 -1.3
624,263 + Psest_0567 0.66 +0.3
624,263 + Psest_0567 0.66 +0.1
624,263 + Psest_0567 0.66 +0.9
624,263 + Psest_0567 0.66 -0.9
624,264 - Psest_0567 0.66 -0.6
624,264 - Psest_0567 0.66 +0.1
624,296 + Psest_0567 0.69 -0.2
624,297 - Psest_0567 0.69 +1.1
624,308 + Psest_0567 0.70 +0.8
624,335 + Psest_0567 0.72 -0.0
624,335 + Psest_0567 0.72 -1.6
624,335 + Psest_0567 0.72 +1.7
624,336 - Psest_0567 0.72 +0.4
624,336 - Psest_0567 0.72 -0.2
624,336 - Psest_0567 0.72 -0.1
624,935 + +0.1
624,936 - -0.2
624,936 - +0.2
624,936 - -1.9
624,936 - -1.8
624,981 - -2.5
625,058 - -0.0
625,307 + Psest_0568 0.47 -1.6
625,308 - Psest_0568 0.47 +0.4
625,308 - Psest_0568 0.47 +1.7
625,308 - Psest_0568 0.47 -1.7
625,308 - Psest_0568 0.47 -1.8
625,428 + Psest_0568 0.66 -0.4
625,429 - Psest_0568 0.67 -2.2
625,638 - +0.7
625,944 - -0.3
625,944 - -0.3
625,944 - +0.3
625,945 + -0.2
625,945 + -0.6
625,945 + +0.4
625,945 + -1.0
625,945 + +1.1
625,946 - -2.4
625,946 - -0.1
625,946 - +0.1
625,946 - +2.4
625,946 - -1.0
626,160 - Psest_0570 0.27 -0.4
626,181 + Psest_0570 0.32 +1.4
626,181 + Psest_0570 0.32 +0.1
626,181 + Psest_0570 0.32 +0.7
626,182 - Psest_0570 0.33 -0.1
626,197 + Psest_0570 0.36 -0.8
626,373 + Psest_0570 0.81 +1.1
626,373 + Psest_0570 0.81 +0.1
626,373 + Psest_0570 0.81 -0.9
626,373 + Psest_0570 0.81 +0.2
626,374 - Psest_0570 0.81 -2.8
626,374 - Psest_0570 0.81 -0.7
626,374 - Psest_0570 0.81 -1.0
626,374 - Psest_0570 0.81 -2.1
626,374 - Psest_0570 0.81 +1.1
626,374 - Psest_0570 0.81 +0.7
626,374 - Psest_0570 0.81 +1.5
626,415 + -1.4
626,416 - +2.7
626,558 + +0.3
626,559 - +2.3
626,560 + +0.3
626,560 + +0.7
626,560 + -1.3
626,560 + +0.4
626,560 + -0.9
626,561 - +3.2
626,561 - -0.9
626,582 + +1.4
626,582 + +1.4

Or see this region's nucleotide sequence