Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0547

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0545 and Psest_0546 overlap by 4 nucleotidesPsest_0546 and Psest_0547 overlap by 4 nucleotidesPsest_0547 and Psest_0548 overlap by 4 nucleotidesPsest_0548 and Psest_0549 are separated by 163 nucleotides Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970 _0545 Psest_0546: Psest_0546 - hypothetical protein, at 600,967 to 601,632 _0546 Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321 _0547 Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818 _0548 Psest_0549: Psest_0549 - Predicted acetyltransferase, at 602,982 to 603,485 _0549 Position (kb) 601 602 603Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.873 kb on + strand, within Psest_0545at 601.060 kb on - strand, within Psest_0546at 601.080 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.169 kb on - strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.362 kb on + strand, within Psest_0546at 601.429 kb on + strand, within Psest_0546at 601.595 kb on - strandat 601.637 kb on + strandat 601.637 kb on + strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.651 kb on + strandat 601.651 kb on + strandat 601.652 kb on - strandat 601.652 kb on - strandat 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.240 kb on - strand, within Psest_0547at 602.246 kb on - strand, within Psest_0547at 602.327 kb on + strandat 602.356 kb on - strandat 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.716 kb on + strand, within Psest_0548at 602.754 kb on + strand, within Psest_0548at 602.754 kb on + strand, within Psest_0548at 602.755 kb on - strand, within Psest_0548at 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.880 kb on + strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.881 kb on - strandat 602.883 kb on - strandat 602.883 kb on - strandat 602.883 kb on - strandat 602.945 kb on + strandat 602.945 kb on + strandat 602.946 kb on - strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.007 kb on + strandat 603.025 kb on + strandat 603.026 kb on - strandat 603.164 kb on + strand, within Psest_0549at 603.316 kb on + strand, within Psest_0549at 603.316 kb on + strand, within Psest_0549at 603.316 kb on + strand, within Psest_0549at 603.316 kb on + strand, within Psest_0549

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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600,843 + Psest_0545 0.79 +0.1
600,843 + Psest_0545 0.79 -1.8
600,843 + Psest_0545 0.79 +1.2
600,843 + Psest_0545 0.79 -1.1
600,843 + Psest_0545 0.79 -1.4
600,843 + Psest_0545 0.79 -0.3
600,843 + Psest_0545 0.79 -2.1
600,843 + Psest_0545 0.79 -0.8
600,843 + Psest_0545 0.79 +1.8
600,843 + Psest_0545 0.79 -1.1
600,843 + Psest_0545 0.79 +0.6
600,844 - Psest_0545 0.79 -0.8
600,844 - Psest_0545 0.79 -1.8
600,844 - Psest_0545 0.79 -0.4
600,844 - Psest_0545 0.79 -0.6
600,844 - Psest_0545 0.79 +0.8
600,844 - Psest_0545 0.79 -0.2
600,844 - Psest_0545 0.79 +0.3
600,844 - Psest_0545 0.79 -0.4
600,844 - Psest_0545 0.79 -1.2
600,873 + Psest_0545 0.84 +2.8
601,060 - Psest_0546 0.14 -0.7
601,080 + Psest_0546 0.17 -3.0
601,099 + Psest_0546 0.20 +1.2
601,099 + Psest_0546 0.20 -1.4
601,168 + Psest_0546 0.30 -0.9
601,168 + Psest_0546 0.30 -1.4
601,168 + Psest_0546 0.30 +0.6
601,168 + Psest_0546 0.30 +1.4
601,168 + Psest_0546 0.30 -1.7
601,169 - Psest_0546 0.30 +0.0
601,317 + Psest_0546 0.53 -1.8
601,317 + Psest_0546 0.53 +1.3
601,317 + Psest_0546 0.53 -0.3
601,317 + Psest_0546 0.53 +1.8
601,317 + Psest_0546 0.53 +0.7
601,362 + Psest_0546 0.59 -0.7
601,429 + Psest_0546 0.69 +3.1
601,595 - -0.3
601,637 + +1.6
601,637 + +0.4
601,638 - +0.1
601,638 - +0.2
601,638 - +2.1
601,638 - +2.1
601,638 - +0.1
601,638 - -1.3
601,651 + +1.9
601,651 + +1.0
601,652 - +0.3
601,652 - -0.3
602,239 + Psest_0547 0.88 -0.6
602,239 + Psest_0547 0.88 -0.8
602,239 + Psest_0547 0.88 -1.1
602,240 - Psest_0547 0.88 -1.6
602,246 - Psest_0547 0.89 -0.4
602,327 + -1.3
602,356 - +0.0
602,484 + Psest_0548 0.33 +1.3
602,484 + Psest_0548 0.33 +0.4
602,484 + Psest_0548 0.33 +0.2
602,484 + Psest_0548 0.33 -0.4
602,485 - Psest_0548 0.33 +0.2
602,485 - Psest_0548 0.33 -0.9
602,485 - Psest_0548 0.33 -2.2
602,485 - Psest_0548 0.33 -2.8
602,485 - Psest_0548 0.33 -0.0
602,716 + Psest_0548 0.79 +0.4
602,754 + Psest_0548 0.87 -0.4
602,754 + Psest_0548 0.87 +0.1
602,755 - Psest_0548 0.87 -0.7
602,880 + +1.1
602,880 + +1.2
602,880 + -0.5
602,880 + -3.0
602,880 + -0.6
602,880 + -1.4
602,880 + +0.6
602,880 + +1.4
602,880 + +0.3
602,881 - +0.1
602,881 - +0.8
602,881 - +0.9
602,881 - -2.1
602,881 - -2.4
602,881 - +1.2
602,881 - +1.4
602,881 - -0.6
602,881 - -0.6
602,883 - -1.9
602,883 - -2.6
602,883 - -0.2
602,945 + -0.5
602,945 + -1.1
602,946 - -1.5
603,007 + +3.4
603,007 + +0.4
603,007 + +1.0
603,007 + -0.3
603,007 + +0.3
603,007 + +0.8
603,007 + +0.1
603,007 + -1.3
603,007 + -1.0
603,007 + -0.8
603,007 + +1.3
603,007 + +1.0
603,007 + +0.2
603,007 + +1.7
603,025 + -0.5
603,026 - +0.8
603,164 + Psest_0549 0.36 +0.5
603,316 + Psest_0549 0.66 +0.4
603,316 + Psest_0549 0.66 -0.8
603,316 + Psest_0549 0.66 +1.4
603,316 + Psest_0549 0.66 -0.9

Or see this region's nucleotide sequence