Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0508 and Psest_0509 overlap by 1 nucleotides Psest_0509 and Psest_0510 are separated by 15 nucleotides Psest_0510 and Psest_0511 are separated by 3 nucleotides Psest_0511 and Psest_0512 are separated by 9 nucleotides
Psest_0508: Psest_0508 - gamma-glutamyl phosphate reductase, at 561,976 to 563,241
_0508
Psest_0509: Psest_0509 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 563,241 to 563,900
_0509
Psest_0510: Psest_0510 - iojap-like ribosome-associated protein, at 563,916 to 564,275
_0510
Psest_0511: Psest_0511 - rRNA large subunit m3Psi methyltransferase RlmH, at 564,279 to 564,746
_0511
Psest_0512: Psest_0512 - penicillin-binding protein 2, at 564,756 to 566,645
_0512
Position (kb) 563
564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 562.924 kb on + strand, within Psest_0508 at 562.924 kb on + strand, within Psest_0508 at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 563.206 kb on + strand at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.021 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.058 kb on + strand, within Psest_0510 at 564.207 kb on + strand, within Psest_0510 at 564.207 kb on + strand, within Psest_0510 at 564.345 kb on + strand, within Psest_0511 at 564.502 kb on + strand, within Psest_0511 at 564.502 kb on + strand, within Psest_0511 at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 562,924 + Psest_0508 0.75 -2.2 562,924 + Psest_0508 0.75 -4.5 563,206 + -3.3 563,206 + -2.8 563,206 + -0.2 563,206 + -0.2 563,206 + -2.2 563,206 + -0.2 564,021 + Psest_0510 0.29 -0.9 564,021 + Psest_0510 0.29 +0.2 564,021 + Psest_0510 0.29 +1.3 564,021 + Psest_0510 0.29 +2.8 564,021 + Psest_0510 0.29 -1.2 564,021 + Psest_0510 0.29 -1.9 564,021 + Psest_0510 0.29 +1.6 564,021 + Psest_0510 0.29 -1.2 564,058 + Psest_0510 0.39 +1.8 564,058 + Psest_0510 0.39 -1.4 564,058 + Psest_0510 0.39 +0.0 564,207 + Psest_0510 0.81 +0.6 564,207 + Psest_0510 0.81 +0.9 564,345 + Psest_0511 0.14 -0.6 564,502 + Psest_0511 0.48 -2.2 564,502 + Psest_0511 0.48 +0.3 564,744 + +1.4 564,744 + -0.2 564,744 + -1.7 564,744 + +2.0 564,744 + +0.4 564,744 + -1.0 564,744 + -1.8 564,744 + +1.6 564,744 + +1.4 564,744 + -1.4 564,744 + +2.4 564,744 + -0.4 564,744 + -3.3
Or see this region's nucleotide sequence