Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4290 and Psest_4291 are separated by 62 nucleotides Psest_4291 and Psest_4292 are separated by 43 nucleotides Psest_4292 and Psest_4293 are separated by 20 nucleotides
Psest_4290: Psest_4290 - N-carbamoylputrescine amidase, at 4,483,131 to 4,484,012
_4290
Psest_4291: Psest_4291 - agmatine deiminase, at 4,484,075 to 4,485,181
_4291
Psest_4292: Psest_4292 - Predicted enzyme related to lactoylglutathione lyase, at 4,485,225 to 4,485,629
_4292
Psest_4293: Psest_4293 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 4,485,650 to 4,486,648
_4293
Position (kb)
4484
4485
4486 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4483.278 kb on + strand, within Psest_4290 at 4483.278 kb on + strand, within Psest_4290 at 4483.279 kb on - strand, within Psest_4290 at 4483.279 kb on - strand, within Psest_4290 at 4483.279 kb on - strand, within Psest_4290 at 4483.306 kb on - strand, within Psest_4290 at 4483.518 kb on + strand, within Psest_4290 at 4483.518 kb on + strand, within Psest_4290 at 4483.518 kb on + strand, within Psest_4290 at 4483.519 kb on - strand, within Psest_4290 at 4483.521 kb on + strand, within Psest_4290 at 4483.521 kb on + strand, within Psest_4290 at 4483.521 kb on + strand, within Psest_4290 at 4483.522 kb on - strand, within Psest_4290 at 4483.522 kb on - strand, within Psest_4290 at 4483.522 kb on - strand, within Psest_4290 at 4483.522 kb on - strand, within Psest_4290 at 4483.560 kb on - strand, within Psest_4290 at 4483.969 kb on - strand at 4484.069 kb on + strand at 4484.069 kb on + strand at 4484.069 kb on + strand at 4484.069 kb on + strand at 4484.069 kb on + strand at 4484.069 kb on + strand at 4484.070 kb on - strand at 4484.070 kb on - strand at 4484.070 kb on - strand at 4484.070 kb on - strand at 4484.074 kb on + strand at 4484.074 kb on + strand at 4484.074 kb on + strand at 4484.075 kb on - strand at 4484.089 kb on + strand at 4484.111 kb on + strand at 4484.279 kb on + strand, within Psest_4291 at 4484.279 kb on + strand, within Psest_4291 at 4484.279 kb on + strand, within Psest_4291 at 4484.280 kb on - strand, within Psest_4291 at 4484.280 kb on - strand, within Psest_4291 at 4484.450 kb on + strand, within Psest_4291 at 4484.504 kb on + strand, within Psest_4291 at 4484.653 kb on - strand, within Psest_4291 at 4484.875 kb on + strand, within Psest_4291 at 4484.875 kb on + strand, within Psest_4291 at 4484.875 kb on + strand, within Psest_4291 at 4484.875 kb on + strand, within Psest_4291 at 4484.875 kb on + strand, within Psest_4291 at 4484.876 kb on - strand, within Psest_4291 at 4484.876 kb on - strand, within Psest_4291 at 4484.876 kb on - strand, within Psest_4291 at 4484.984 kb on + strand, within Psest_4291 at 4484.985 kb on - strand, within Psest_4291 at 4484.985 kb on - strand, within Psest_4291 at 4485.136 kb on + strand at 4485.175 kb on - strand at 4485.211 kb on + strand at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.360 kb on + strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.361 kb on - strand, within Psest_4292 at 4485.420 kb on + strand, within Psest_4292 at 4485.420 kb on + strand, within Psest_4292 at 4485.420 kb on + strand, within Psest_4292 at 4485.421 kb on - strand, within Psest_4292 at 4485.421 kb on - strand, within Psest_4292 at 4485.421 kb on - strand, within Psest_4292 at 4485.692 kb on - strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.693 kb on + strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.694 kb on - strand at 4485.719 kb on + strand at 4485.753 kb on + strand, within Psest_4293 at 4485.753 kb on + strand, within Psest_4293 at 4485.754 kb on - strand, within Psest_4293 at 4486.006 kb on + strand, within Psest_4293 at 4486.006 kb on + strand, within Psest_4293 at 4486.007 kb on - strand, within Psest_4293
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 4,483,278 + Psest_4290 0.17 -2.1 4,483,278 + Psest_4290 0.17 -1.1 4,483,279 - Psest_4290 0.17 -1.9 4,483,279 - Psest_4290 0.17 +1.3 4,483,279 - Psest_4290 0.17 -0.3 4,483,306 - Psest_4290 0.20 -1.1 4,483,518 + Psest_4290 0.44 -0.1 4,483,518 + Psest_4290 0.44 +0.2 4,483,518 + Psest_4290 0.44 -0.7 4,483,519 - Psest_4290 0.44 -1.7 4,483,521 + Psest_4290 0.44 -0.3 4,483,521 + Psest_4290 0.44 -0.9 4,483,521 + Psest_4290 0.44 -3.5 4,483,522 - Psest_4290 0.44 +0.7 4,483,522 - Psest_4290 0.44 +0.7 4,483,522 - Psest_4290 0.44 -2.0 4,483,522 - Psest_4290 0.44 +0.7 4,483,560 - Psest_4290 0.49 +0.1 4,483,969 - -0.0 4,484,069 + +0.5 4,484,069 + -0.8 4,484,069 + -0.9 4,484,069 + +0.4 4,484,069 + +0.0 4,484,069 + +1.2 4,484,070 - -0.3 4,484,070 - -0.3 4,484,070 - +0.5 4,484,070 - +2.4 4,484,074 + -1.7 4,484,074 + +4.3 4,484,074 + -0.7 4,484,075 - +0.7 4,484,089 + +0.7 4,484,111 + -2.1 4,484,279 + Psest_4291 0.18 +0.4 4,484,279 + Psest_4291 0.18 -2.8 4,484,279 + Psest_4291 0.18 -1.7 4,484,280 - Psest_4291 0.19 +0.6 4,484,280 - Psest_4291 0.19 +3.6 4,484,450 + Psest_4291 0.34 -1.7 4,484,504 + Psest_4291 0.39 +1.6 4,484,653 - Psest_4291 0.52 +1.2 4,484,875 + Psest_4291 0.72 -2.2 4,484,875 + Psest_4291 0.72 -0.4 4,484,875 + Psest_4291 0.72 +2.8 4,484,875 + Psest_4291 0.72 -0.9 4,484,875 + Psest_4291 0.72 +1.9 4,484,876 - Psest_4291 0.72 -1.0 4,484,876 - Psest_4291 0.72 -1.6 4,484,876 - Psest_4291 0.72 +1.4 4,484,984 + Psest_4291 0.82 +1.2 4,484,985 - Psest_4291 0.82 -2.4 4,484,985 - Psest_4291 0.82 +0.3 4,485,136 + -2.7 4,485,175 - +0.4 4,485,211 + -0.8 4,485,360 + Psest_4292 0.33 -0.3 4,485,360 + Psest_4292 0.33 -1.0 4,485,360 + Psest_4292 0.33 +1.2 4,485,360 + Psest_4292 0.33 +1.0 4,485,360 + Psest_4292 0.33 +3.2 4,485,360 + Psest_4292 0.33 -1.3 4,485,360 + Psest_4292 0.33 +0.6 4,485,360 + Psest_4292 0.33 +0.4 4,485,360 + Psest_4292 0.33 -1.3 4,485,360 + Psest_4292 0.33 -1.6 4,485,361 - Psest_4292 0.34 +1.3 4,485,361 - Psest_4292 0.34 -1.0 4,485,361 - Psest_4292 0.34 +1.5 4,485,361 - Psest_4292 0.34 -0.9 4,485,361 - Psest_4292 0.34 +0.3 4,485,361 - Psest_4292 0.34 +0.4 4,485,420 + Psest_4292 0.48 +1.6 4,485,420 + Psest_4292 0.48 +2.0 4,485,420 + Psest_4292 0.48 +0.9 4,485,421 - Psest_4292 0.48 -1.0 4,485,421 - Psest_4292 0.48 +2.5 4,485,421 - Psest_4292 0.48 +1.8 4,485,692 - -0.6 4,485,693 + -1.0 4,485,693 + +2.1 4,485,693 + -0.7 4,485,693 + -1.3 4,485,693 + -0.9 4,485,693 + -1.6 4,485,693 + +1.3 4,485,693 + +0.4 4,485,693 + +0.9 4,485,693 + -0.2 4,485,693 + +1.7 4,485,693 + +1.2 4,485,693 + +0.2 4,485,693 + -0.4 4,485,693 + +0.3 4,485,693 + +0.2 4,485,693 + -0.7 4,485,693 + +0.1 4,485,693 + -0.9 4,485,693 + -1.0 4,485,693 + -0.7 4,485,694 - -1.7 4,485,694 - -1.6 4,485,694 - -0.1 4,485,694 - +0.2 4,485,694 - +0.6 4,485,694 - +0.1 4,485,694 - -0.4 4,485,694 - +0.4 4,485,694 - +0.3 4,485,694 - -0.4 4,485,694 - -1.4 4,485,694 - +1.3 4,485,694 - -1.0 4,485,694 - +0.8 4,485,694 - -1.2 4,485,694 - +0.4 4,485,719 + -0.4 4,485,753 + Psest_4293 0.10 +0.6 4,485,753 + Psest_4293 0.10 -0.6 4,485,754 - Psest_4293 0.10 -2.7 4,486,006 + Psest_4293 0.36 +0.1 4,486,006 + Psest_4293 0.36 -0.1 4,486,007 - Psest_4293 0.36 +1.5
Or see this region's nucleotide sequence