Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0285

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0283 and Psest_0284 are separated by 10 nucleotidesPsest_0284 and Psest_0285 are separated by 66 nucleotidesPsest_0285 and Psest_0286 are separated by 59 nucleotides Psest_0283: Psest_0283 - pyrroline-5-carboxylate reductase, at 298,749 to 299,573 _0283 Psest_0284: Psest_0284 - pyridoxal phosphate enzyme, YggS family, at 299,584 to 300,273 _0284 Psest_0285: Psest_0285 - pilus retraction protein PilT, at 300,340 to 301,374 _0285 Psest_0286: Psest_0286 - pilus retraction protein PilT, at 301,434 to 302,579 _0286 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 299.573 kb on + strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.698 kb on - strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.846 kb on - strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.924 kb on - strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.252 kb on + strandat 300.252 kb on + strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.326 kb on - strandat 300.326 kb on - strandat 300.346 kb on - strandat 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.776 kb on - strand, within Psest_0285at 300.793 kb on + strand, within Psest_0285at 300.793 kb on + strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 300.794 kb on - strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.243 kb on + strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.244 kb on - strand, within Psest_0285at 301.323 kb on + strandat 301.323 kb on + strandat 301.323 kb on + strandat 301.323 kb on + strandat 301.324 kb on - strandat 301.372 kb on + strandat 301.373 kb on - strandat 301.427 kb on + strandat 301.428 kb on - strandat 301.693 kb on - strand, within Psest_0286at 301.693 kb on - strand, within Psest_0286at 302.070 kb on + strand, within Psest_0286at 302.070 kb on + strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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299,573 + -1.6
299,574 - -2.3
299,574 - +2.4
299,574 - -1.6
299,574 - -1.6
299,574 - +1.4
299,698 - Psest_0284 0.17 -0.6
299,845 + Psest_0284 0.38 -1.7
299,845 + Psest_0284 0.38 -0.2
299,846 - Psest_0284 0.38 -1.5
299,908 + Psest_0284 0.47 +0.1
299,908 + Psest_0284 0.47 -1.1
299,908 + Psest_0284 0.47 +0.7
299,908 + Psest_0284 0.47 -0.9
299,908 + Psest_0284 0.47 +0.2
299,908 + Psest_0284 0.47 -1.6
299,908 + Psest_0284 0.47 -3.7
299,909 - Psest_0284 0.47 -1.0
299,909 - Psest_0284 0.47 -1.3
299,909 - Psest_0284 0.47 -1.7
299,909 - Psest_0284 0.47 -0.9
299,909 - Psest_0284 0.47 -2.2
299,909 - Psest_0284 0.47 -2.4
299,909 - Psest_0284 0.47 -0.8
299,909 - Psest_0284 0.47 +0.2
299,909 - Psest_0284 0.47 -0.1
299,909 - Psest_0284 0.47 -0.6
299,909 - Psest_0284 0.47 +3.2
299,909 - Psest_0284 0.47 +1.0
299,909 - Psest_0284 0.47 +0.6
299,909 - Psest_0284 0.47 -2.7
299,909 - Psest_0284 0.47 -0.9
299,909 - Psest_0284 0.47 -0.8
299,909 - Psest_0284 0.47 +0.1
299,909 - Psest_0284 0.47 +1.4
299,909 - Psest_0284 0.47 -1.4
299,909 - Psest_0284 0.47 -2.7
299,909 - Psest_0284 0.47 -1.2
299,910 + Psest_0284 0.47 -0.1
299,910 + Psest_0284 0.47 -0.3
299,910 + Psest_0284 0.47 -2.7
299,910 + Psest_0284 0.47 +1.0
299,910 + Psest_0284 0.47 +0.1
299,910 + Psest_0284 0.47 +0.8
299,910 + Psest_0284 0.47 -1.4
299,910 + Psest_0284 0.47 -1.4
299,911 - Psest_0284 0.47 +1.6
299,911 - Psest_0284 0.47 -1.2
299,911 - Psest_0284 0.47 -0.2
299,911 - Psest_0284 0.47 +1.2
299,911 - Psest_0284 0.47 -0.6
299,911 - Psest_0284 0.47 -0.6
299,911 - Psest_0284 0.47 -0.9
299,911 - Psest_0284 0.47 -2.4
299,911 - Psest_0284 0.47 -0.9
299,911 - Psest_0284 0.47 -1.9
299,911 - Psest_0284 0.47 -1.4
299,911 - Psest_0284 0.47 -0.9
299,911 - Psest_0284 0.47 +0.4
299,911 - Psest_0284 0.47 +0.7
299,911 - Psest_0284 0.47 +0.0
299,911 - Psest_0284 0.47 -1.1
299,911 - Psest_0284 0.47 -1.4
299,911 - Psest_0284 0.47 -0.2
299,911 - Psest_0284 0.47 -0.4
299,911 - Psest_0284 0.47 +0.1
299,923 + Psest_0284 0.49 -2.4
299,923 + Psest_0284 0.49 -2.6
299,924 - Psest_0284 0.49 -0.9
300,101 + Psest_0284 0.75 -1.4
300,101 + Psest_0284 0.75 -1.2
300,101 + Psest_0284 0.75 -1.3
300,101 + Psest_0284 0.75 -2.2
300,101 + Psest_0284 0.75 +0.0
300,101 + Psest_0284 0.75 -1.2
300,102 - Psest_0284 0.75 -1.3
300,102 - Psest_0284 0.75 +1.4
300,102 - Psest_0284 0.75 +1.2
300,102 - Psest_0284 0.75 -2.0
300,102 - Psest_0284 0.75 -1.4
300,102 - Psest_0284 0.75 -0.5
300,252 + +3.0
300,252 + -0.6
300,253 - +1.2
300,253 - -0.1
300,253 - +0.0
300,253 - +3.0
300,274 + -0.9
300,274 + -0.7
300,274 + -0.6
300,274 + -0.8
300,275 - +6.2
300,275 - +3.6
300,275 - +4.8
300,275 - +4.7
300,275 - +6.4
300,275 - +6.7
300,275 - +5.0
300,275 - +5.7
300,275 - +5.2
300,275 - +6.4
300,275 - +5.5
300,275 - +9.1
300,275 - +3.9
300,311 + +2.8
300,311 + +0.7
300,311 + -0.0
300,312 - +7.3
300,312 - +6.7
300,312 - +6.7
300,312 - +4.5
300,312 - +4.8
300,312 - +6.6
300,312 - +5.9
300,312 - +7.3
300,312 - +5.3
300,312 - +7.0
300,312 - +7.3
300,312 - +5.7
300,326 - +8.6
300,326 - +7.7
300,346 - +7.9
300,493 + Psest_0285 0.15 +8.5
300,493 + Psest_0285 0.15 +6.5
300,493 + Psest_0285 0.15 +4.0
300,494 - Psest_0285 0.15 +6.8
300,494 - Psest_0285 0.15 +6.8
300,494 - Psest_0285 0.15 +7.1
300,494 - Psest_0285 0.15 +7.4
300,494 - Psest_0285 0.15 +7.3
300,494 - Psest_0285 0.15 +4.2
300,776 - Psest_0285 0.42 +4.8
300,793 + Psest_0285 0.44 +7.4
300,793 + Psest_0285 0.44 +6.4
300,794 - Psest_0285 0.44 +6.9
300,794 - Psest_0285 0.44 +4.4
300,794 - Psest_0285 0.44 +7.3
301,243 + Psest_0285 0.87 +8.3
301,243 + Psest_0285 0.87 +6.7
301,243 + Psest_0285 0.87 +6.9
301,243 + Psest_0285 0.87 +8.6
301,243 + Psest_0285 0.87 +8.6
301,243 + Psest_0285 0.87 +6.1
301,243 + Psest_0285 0.87 +4.1
301,243 + Psest_0285 0.87 +5.9
301,243 + Psest_0285 0.87 +3.2
301,243 + Psest_0285 0.87 +5.3
301,244 - Psest_0285 0.87 +7.9
301,244 - Psest_0285 0.87 +6.9
301,244 - Psest_0285 0.87 +7.5
301,244 - Psest_0285 0.87 +6.6
301,244 - Psest_0285 0.87 +5.8
301,244 - Psest_0285 0.87 +4.7
301,244 - Psest_0285 0.87 +7.8
301,244 - Psest_0285 0.87 +5.8
301,244 - Psest_0285 0.87 +7.4
301,244 - Psest_0285 0.87 +5.2
301,244 - Psest_0285 0.87 +9.5
301,323 + +4.5
301,323 + +5.7
301,323 + +5.9
301,323 + +4.9
301,324 - +6.7
301,372 + -1.2
301,373 - +0.5
301,427 + +1.2
301,428 - +0.1
301,693 - Psest_0286 0.23 +3.9
301,693 - Psest_0286 0.23 +1.3
302,070 + Psest_0286 0.55 -0.1
302,070 + Psest_0286 0.55 +1.2
302,071 - Psest_0286 0.56 +0.5
302,071 - Psest_0286 0.56 +1.1
302,071 - Psest_0286 0.56 +1.9

Or see this region's nucleotide sequence