Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2836

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2835 and Psest_2836 are separated by 59 nucleotidesPsest_2836 and Psest_2837 overlap by 4 nucleotidesPsest_2837 and Psest_2838 overlap by 7 nucleotides Psest_2835: Psest_2835 - RIP metalloprotease RseP, at 3,026,418 to 3,027,770 _2835 Psest_2836: Psest_2836 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,027,830 to 3,029,020 _2836 Psest_2837: Psest_2837 - CDP-diglyceride synthetase, at 3,029,017 to 3,029,832 _2837 Psest_2838: Psest_2838 - undecaprenyl diphosphate synthase, at 3,029,826 to 3,030,587 _2838 Position (kb) 3027 3028 3029 3030Strain fitness (log2 ratio) -1 0 1at 3026.989 kb on - strand, within Psest_2835at 3027.756 kb on - strandat 3027.758 kb on - strandat 3027.758 kb on - strandat 3027.758 kb on - strandat 3027.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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3,026,989 - Psest_2835 0.42 +1.2
3,027,756 - +1.2
3,027,758 - +1.2
3,027,758 - +1.2
3,027,758 - +1.2
3,027,771 - -0.5

Or see this region's nucleotide sequence