Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2820

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2819 and Psest_2820 are separated by 34 nucleotidesPsest_2820 and Psest_2821 overlap by 4 nucleotidesPsest_2821 and Psest_2822 are separated by 131 nucleotides Psest_2819: Psest_2819 - hypothetical protein, at 3,006,745 to 3,007,911 _2819 Psest_2820: Psest_2820 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,007,946 to 3,008,662 _2820 Psest_2821: Psest_2821 - Septum formation initiator, at 3,008,659 to 3,008,946 _2821 Psest_2822: Psest_2822 - phosphopyruvate hydratase, at 3,009,078 to 3,010,367 _2822 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3006.953 kb on - strand, within Psest_2819at 3007.024 kb on + strand, within Psest_2819at 3007.075 kb on - strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.199 kb on + strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.200 kb on - strand, within Psest_2819at 3007.255 kb on - strand, within Psest_2819at 3007.288 kb on + strand, within Psest_2819at 3007.325 kb on + strand, within Psest_2819at 3007.326 kb on - strand, within Psest_2819at 3007.503 kb on - strand, within Psest_2819at 3007.792 kb on - strand, within Psest_2819at 3007.900 kb on + strandat 3008.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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3,006,953 - Psest_2819 0.18 -0.3
3,007,024 + Psest_2819 0.24 +1.5
3,007,075 - Psest_2819 0.28 -0.6
3,007,199 + Psest_2819 0.39 -0.4
3,007,199 + Psest_2819 0.39 -0.7
3,007,199 + Psest_2819 0.39 +0.6
3,007,200 - Psest_2819 0.39 +0.3
3,007,200 - Psest_2819 0.39 +0.3
3,007,200 - Psest_2819 0.39 +1.1
3,007,200 - Psest_2819 0.39 +3.1
3,007,200 - Psest_2819 0.39 +1.2
3,007,200 - Psest_2819 0.39 -0.7
3,007,200 - Psest_2819 0.39 -0.5
3,007,255 - Psest_2819 0.44 -2.1
3,007,288 + Psest_2819 0.47 +1.6
3,007,325 + Psest_2819 0.50 +0.1
3,007,326 - Psest_2819 0.50 +1.3
3,007,503 - Psest_2819 0.65 -0.7
3,007,792 - Psest_2819 0.90 +1.8
3,007,900 + +1.0
3,008,925 - -0.7

Or see this region's nucleotide sequence