Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0158 and Psest_0159 are separated by 3 nucleotides Psest_0159 and Psest_0160 are separated by 2 nucleotides Psest_0160 and Psest_0161 are separated by 71 nucleotides
Psest_0158: Psest_0158 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 156,307 to 157,053
_0158
Psest_0159: Psest_0159 - Uncharacterized protein conserved in bacteria, at 157,057 to 157,848
_0159
Psest_0160: Psest_0160 - C-terminal peptidase (prc), at 157,851 to 159,170
_0160
Psest_0161: Psest_0161 - Membrane-bound metallopeptidase, at 159,242 to 160,504
_0161
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 156.874 kb on + strand, within Psest_0158 at 156.987 kb on - strand at 157.059 kb on - strand at 157.065 kb on - strand at 157.435 kb on + strand, within Psest_0159 at 157.435 kb on + strand, within Psest_0159 at 157.436 kb on - strand, within Psest_0159 at 157.436 kb on - strand, within Psest_0159 at 157.537 kb on + strand, within Psest_0159 at 157.537 kb on + strand, within Psest_0159 at 157.732 kb on + strand, within Psest_0159 at 157.790 kb on + strand at 157.791 kb on - strand at 157.792 kb on + strand at 157.793 kb on - strand at 158.114 kb on - strand, within Psest_0160 at 159.184 kb on + strand at 159.307 kb on - strand at 159.342 kb on - strand at 159.412 kb on - strand, within Psest_0161 at 159.482 kb on + strand, within Psest_0161 at 159.482 kb on + strand, within Psest_0161 at 159.483 kb on - strand, within Psest_0161 at 159.540 kb on - strand, within Psest_0161 at 160.086 kb on + strand, within Psest_0161
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 156,874 + Psest_0158 0.76 +0.4 156,987 - +0.3 157,059 - -0.8 157,065 - -0.5 157,435 + Psest_0159 0.48 -1.6 157,435 + Psest_0159 0.48 -0.9 157,436 - Psest_0159 0.48 -0.2 157,436 - Psest_0159 0.48 -3.1 157,537 + Psest_0159 0.61 -0.5 157,537 + Psest_0159 0.61 +0.2 157,732 + Psest_0159 0.85 +1.8 157,790 + +0.2 157,791 - +0.6 157,792 + -1.9 157,793 - -1.5 158,114 - Psest_0160 0.20 -2.0 159,184 + +3.0 159,307 - +0.8 159,342 - +3.2 159,412 - Psest_0161 0.13 -0.9 159,482 + Psest_0161 0.19 +3.0 159,482 + Psest_0161 0.19 -0.9 159,483 - Psest_0161 0.19 +0.2 159,540 - Psest_0161 0.24 +0.2 160,086 + Psest_0161 0.67 +1.3
Or see this region's nucleotide sequence