Experiment: L-tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0113 and Psest_0114 overlap by 4 nucleotides Psest_0114 and Psest_0115 are separated by 191 nucleotides Psest_0115 and Psest_0116 are separated by 16 nucleotides Psest_0116 and Psest_0117 overlap by 4 nucleotides
Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414
_0113
Psest_0114: Psest_0114 - RNA polymerase sigma factor, sigma-70 family, at 112,411 to 112,980
_0114
Psest_0115: Psest_0115 - Predicted integral membrane protein, at 113,172 to 113,444
_0115
Psest_0116: Psest_0116 - Uncharacterized protein conserved in bacteria, at 113,461 to 114,288
_0116
Psest_0117: Psest_0117 - Uncharacterized protein conserved in bacteria (DUF2063)., at 114,285 to 115,076
_0117
Position (kb)
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 112.281 kb on + strand, within Psest_0113 at 112.281 kb on + strand, within Psest_0113 at 112.577 kb on - strand, within Psest_0114 at 112.789 kb on + strand, within Psest_0114 at 112.789 kb on + strand, within Psest_0114 at 112.968 kb on + strand at 112.969 kb on - strand at 112.969 kb on - strand at 113.112 kb on + strand at 113.112 kb on + strand at 113.112 kb on + strand at 113.112 kb on + strand at 113.113 kb on - strand at 113.113 kb on - strand at 113.113 kb on - strand at 113.113 kb on - strand at 113.113 kb on - strand at 113.384 kb on + strand, within Psest_0115 at 113.448 kb on + strand at 113.449 kb on - strand at 113.484 kb on - strand at 113.563 kb on + strand, within Psest_0116 at 113.563 kb on + strand, within Psest_0116 at 113.563 kb on + strand, within Psest_0116 at 113.563 kb on + strand, within Psest_0116 at 113.563 kb on + strand, within Psest_0116 at 113.563 kb on + strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.564 kb on - strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.767 kb on + strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.768 kb on - strand, within Psest_0116 at 113.888 kb on - strand, within Psest_0116 at 113.888 kb on - strand, within Psest_0116
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine remove 112,281 + Psest_0113 0.79 +0.3 112,281 + Psest_0113 0.79 -1.2 112,577 - Psest_0114 0.29 -2.2 112,789 + Psest_0114 0.66 +0.8 112,789 + Psest_0114 0.66 -1.8 112,968 + +2.4 112,969 - -2.4 112,969 - -1.5 113,112 + -0.0 113,112 + +0.7 113,112 + +0.4 113,112 + +0.4 113,113 - -0.3 113,113 - -0.2 113,113 - +0.8 113,113 - +0.4 113,113 - -0.4 113,384 + Psest_0115 0.78 +0.8 113,448 + -1.9 113,449 - -0.3 113,484 - +0.2 113,563 + Psest_0116 0.12 -0.9 113,563 + Psest_0116 0.12 -1.3 113,563 + Psest_0116 0.12 -0.0 113,563 + Psest_0116 0.12 -1.4 113,563 + Psest_0116 0.12 -0.8 113,563 + Psest_0116 0.12 +1.3 113,564 - Psest_0116 0.12 -3.2 113,564 - Psest_0116 0.12 +0.2 113,564 - Psest_0116 0.12 +1.2 113,564 - Psest_0116 0.12 +0.0 113,564 - Psest_0116 0.12 +0.3 113,564 - Psest_0116 0.12 +0.5 113,564 - Psest_0116 0.12 +0.2 113,564 - Psest_0116 0.12 +0.6 113,767 + Psest_0116 0.37 -0.6 113,767 + Psest_0116 0.37 +0.4 113,767 + Psest_0116 0.37 +1.7 113,767 + Psest_0116 0.37 -2.2 113,767 + Psest_0116 0.37 +0.1 113,767 + Psest_0116 0.37 +0.2 113,768 - Psest_0116 0.37 -1.4 113,768 - Psest_0116 0.37 +1.4 113,768 - Psest_0116 0.37 +0.2 113,768 - Psest_0116 0.37 +0.4 113,768 - Psest_0116 0.37 -2.4 113,768 - Psest_0116 0.37 +0.6 113,768 - Psest_0116 0.37 +0.2 113,888 - Psest_0116 0.52 -1.0 113,888 - Psest_0116 0.52 +2.1
Or see this region's nucleotide sequence