Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0115

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0113 and Psest_0114 overlap by 4 nucleotidesPsest_0114 and Psest_0115 are separated by 191 nucleotidesPsest_0115 and Psest_0116 are separated by 16 nucleotidesPsest_0116 and Psest_0117 overlap by 4 nucleotides Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414 _0113 Psest_0114: Psest_0114 - RNA polymerase sigma factor, sigma-70 family, at 112,411 to 112,980 _0114 Psest_0115: Psest_0115 - Predicted integral membrane protein, at 113,172 to 113,444 _0115 Psest_0116: Psest_0116 - Uncharacterized protein conserved in bacteria, at 113,461 to 114,288 _0116 Psest_0117: Psest_0117 - Uncharacterized protein conserved in bacteria (DUF2063)., at 114,285 to 115,076 _0117 Position (kb) 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.281 kb on + strand, within Psest_0113at 112.281 kb on + strand, within Psest_0113at 112.577 kb on - strand, within Psest_0114at 112.789 kb on + strand, within Psest_0114at 112.789 kb on + strand, within Psest_0114at 112.968 kb on + strandat 112.969 kb on - strandat 112.969 kb on - strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.384 kb on + strand, within Psest_0115at 113.448 kb on + strandat 113.449 kb on - strandat 113.484 kb on - strandat 113.563 kb on + strand, within Psest_0116at 113.563 kb on + strand, within Psest_0116at 113.563 kb on + strand, within Psest_0116at 113.563 kb on + strand, within Psest_0116at 113.563 kb on + strand, within Psest_0116at 113.563 kb on + strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.564 kb on - strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.767 kb on + strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.768 kb on - strand, within Psest_0116at 113.888 kb on - strand, within Psest_0116at 113.888 kb on - strand, within Psest_0116

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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112,281 + Psest_0113 0.79 +0.3
112,281 + Psest_0113 0.79 -1.2
112,577 - Psest_0114 0.29 -2.2
112,789 + Psest_0114 0.66 +0.8
112,789 + Psest_0114 0.66 -1.8
112,968 + +2.4
112,969 - -2.4
112,969 - -1.5
113,112 + -0.0
113,112 + +0.7
113,112 + +0.4
113,112 + +0.4
113,113 - -0.3
113,113 - -0.2
113,113 - +0.8
113,113 - +0.4
113,113 - -0.4
113,384 + Psest_0115 0.78 +0.8
113,448 + -1.9
113,449 - -0.3
113,484 - +0.2
113,563 + Psest_0116 0.12 -0.9
113,563 + Psest_0116 0.12 -1.3
113,563 + Psest_0116 0.12 -0.0
113,563 + Psest_0116 0.12 -1.4
113,563 + Psest_0116 0.12 -0.8
113,563 + Psest_0116 0.12 +1.3
113,564 - Psest_0116 0.12 -3.2
113,564 - Psest_0116 0.12 +0.2
113,564 - Psest_0116 0.12 +1.2
113,564 - Psest_0116 0.12 +0.0
113,564 - Psest_0116 0.12 +0.3
113,564 - Psest_0116 0.12 +0.5
113,564 - Psest_0116 0.12 +0.2
113,564 - Psest_0116 0.12 +0.6
113,767 + Psest_0116 0.37 -0.6
113,767 + Psest_0116 0.37 +0.4
113,767 + Psest_0116 0.37 +1.7
113,767 + Psest_0116 0.37 -2.2
113,767 + Psest_0116 0.37 +0.1
113,767 + Psest_0116 0.37 +0.2
113,768 - Psest_0116 0.37 -1.4
113,768 - Psest_0116 0.37 +1.4
113,768 - Psest_0116 0.37 +0.2
113,768 - Psest_0116 0.37 +0.4
113,768 - Psest_0116 0.37 -2.4
113,768 - Psest_0116 0.37 +0.6
113,768 - Psest_0116 0.37 +0.2
113,888 - Psest_0116 0.52 -1.0
113,888 - Psest_0116 0.52 +2.1

Or see this region's nucleotide sequence