Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1109

Experiment: L-tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1106 and Psest_1107 are separated by 30 nucleotidesPsest_1107 and Psest_1108 are separated by 58 nucleotidesPsest_1108 and Psest_1109 are separated by 19 nucleotidesPsest_1109 and Psest_1110 are separated by 0 nucleotidesPsest_1110 and Psest_1111 are separated by 3 nucleotides Psest_1106: Psest_1106 - ribose-phosphate pyrophosphokinase, at 1,201,892 to 1,202,881 _1106 Psest_1107: Psest_1107 - tRNA_Lys_TTT, at 1,202,912 to 1,202,987 _1107 Psest_1108: Psest_1108 - tRNA_Gln_TTG, at 1,203,046 to 1,203,120 _1108 Psest_1109: Psest_1109 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,203,140 to 1,204,000 _1109 Psest_1110: Psest_1110 - outer membrane lipoprotein LolB, at 1,204,001 to 1,204,621 _1110 Psest_1111: Psest_1111 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,204,625 to 1,206,352 _1111 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1203.003 kb on - strandat 1203.003 kb on - strandat 1203.003 kb on - strandat 1203.003 kb on - strandat 1203.003 kb on - strandat 1203.028 kb on - strandat 1203.028 kb on - strandat 1204.689 kb on - strandat 1204.689 kb on - strandat 1204.770 kb on - strandat 1204.770 kb on - strandat 1204.808 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine
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1,203,003 - -2.0
1,203,003 - -1.0
1,203,003 - -0.0
1,203,003 - +0.8
1,203,003 - -2.0
1,203,028 - -1.9
1,203,028 - +1.3
1,204,689 - -0.4
1,204,689 - +0.4
1,204,770 - -1.5
1,204,770 - -1.7
1,204,808 + Psest_1111 0.11 +0.3
1,204,896 + Psest_1111 0.16 +3.1
1,204,896 + Psest_1111 0.16 +1.1
1,204,896 + Psest_1111 0.16 +3.5

Or see this region's nucleotide sequence