Experiment: Post-colonization (Day 8) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0404 and BT0405 are separated by 153 nucleotides BT0405 and BT0406 are separated by 23 nucleotides BT0406 and BT0407 are separated by 8 nucleotides BT0407 and BT0408 are separated by 28 nucleotides
BT0404: BT0404 - hypothetical protein (NCBI ptt file), at 491,607 to 493,934
BT0404
BT0405: BT0405 - hypothetical protein (NCBI ptt file), at 494,088 to 494,447
BT0405
BT0406: BT0406 - hypothetical protein (NCBI ptt file), at 494,471 to 494,728
BT0406
BT0407: BT0407 - hypothetical protein (NCBI ptt file), at 494,737 to 495,096
BT0407
BT0408: BT0408 - hypothetical protein (NCBI ptt file), at 495,125 to 495,334
BT0408
Position (kb) 494
495 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.439 kb on - strand, within BT0404 at 493.498 kb on + strand, within BT0404 at 493.516 kb on - strand, within BT0404 at 493.555 kb on + strand, within BT0404 at 493.556 kb on - strand, within BT0404 at 493.844 kb on + strand at 493.959 kb on - strand at 494.048 kb on - strand at 494.129 kb on + strand, within BT0405 at 494.196 kb on - strand, within BT0405 at 494.335 kb on + strand, within BT0405 at 494.356 kb on + strand, within BT0405 at 494.472 kb on + strand at 494.472 kb on + strand at 494.696 kb on + strand, within BT0406 at 494.729 kb on - strand at 494.739 kb on - strand at 494.826 kb on + strand, within BT0407 at 494.981 kb on - strand, within BT0407 at 495.242 kb on - strand, within BT0408 at 495.318 kb on - strand at 495.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage6;Mouse1 remove 493,439 - BT0404 0.79 -1.5 493,498 + BT0404 0.81 +1.1 493,516 - BT0404 0.82 +0.6 493,555 + BT0404 0.84 +1.1 493,556 - BT0404 0.84 -0.3 493,844 + -0.8 493,959 - +0.9 494,048 - -2.3 494,129 + BT0405 0.11 -1.7 494,196 - BT0405 0.30 +0.3 494,335 + BT0405 0.69 -2.0 494,356 + BT0405 0.74 -0.7 494,472 + -0.7 494,472 + -0.7 494,696 + BT0406 0.87 -2.1 494,729 - -1.6 494,739 - -1.3 494,826 + BT0407 0.25 +0.7 494,981 - BT0407 0.68 +3.7 495,242 - BT0408 0.56 +0.2 495,318 - +0.0 495,339 + +0.2
Or see this region's nucleotide sequence