Experiment: Post-colonization (Day 8) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0368 and BT0369 are separated by 1 nucleotides BT0369 and BT0370 are separated by 119 nucleotides
BT0368: BT0368 - alpha-L-arabinofuranosidase A precursor (NCBI ptt file), at 452,372 to 454,354
BT0368
BT0369: BT0369 - endo-1,4-beta-xylanase D precursor (NCBI ptt file), at 454,356 to 455,321
BT0369
BT0370: BT0370 - galactokinase (NCBI ptt file), at 455,441 to 456,595
BT0370
Position (kb) 454
455
456 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 453.483 kb on - strand, within BT0368 at 453.623 kb on + strand, within BT0368 at 453.721 kb on + strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.722 kb on - strand, within BT0368 at 453.725 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.858 kb on + strand, within BT0368 at 453.862 kb on + strand, within BT0368 at 453.862 kb on + strand, within BT0368 at 453.863 kb on - strand, within BT0368 at 453.958 kb on - strand, within BT0368 at 453.962 kb on + strand, within BT0368 at 453.965 kb on + strand, within BT0368 at 453.966 kb on - strand, within BT0368 at 454.079 kb on + strand, within BT0368 at 454.118 kb on - strand, within BT0368 at 454.121 kb on - strand, within BT0368 at 454.144 kb on - strand, within BT0368 at 454.235 kb on - strand at 454.337 kb on - strand at 454.512 kb on + strand, within BT0369 at 454.512 kb on + strand, within BT0369 at 454.513 kb on - strand, within BT0369 at 454.579 kb on + strand, within BT0369 at 454.702 kb on - strand, within BT0369 at 454.707 kb on + strand, within BT0369 at 454.896 kb on + strand, within BT0369 at 454.903 kb on - strand, within BT0369 at 454.914 kb on + strand, within BT0369 at 454.923 kb on + strand, within BT0369 at 455.015 kb on + strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.068 kb on + strand, within BT0369 at 455.088 kb on - strand, within BT0369 at 455.188 kb on - strand, within BT0369 at 455.262 kb on + strand at 455.263 kb on - strand at 455.266 kb on - strand at 455.331 kb on + strand at 455.339 kb on + strand at 455.348 kb on + strand at 455.370 kb on + strand at 455.474 kb on + strand at 455.474 kb on + strand at 455.475 kb on - strand at 455.475 kb on - strand at 455.483 kb on + strand at 455.483 kb on + strand at 455.483 kb on + strand at 455.484 kb on - strand at 455.573 kb on - strand, within BT0370 at 455.622 kb on + strand, within BT0370 at 455.622 kb on + strand, within BT0370 at 455.704 kb on - strand, within BT0370 at 455.718 kb on - strand, within BT0370 at 455.763 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.800 kb on + strand, within BT0370 at 455.851 kb on + strand, within BT0370 at 455.979 kb on - strand, within BT0370 at 456.180 kb on - strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.229 kb on + strand, within BT0370
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage6;Mouse1 remove 453,483 - BT0368 0.56 +1.3 453,623 + BT0368 0.63 -0.3 453,721 + BT0368 0.68 -1.8 453,722 - BT0368 0.68 -0.6 453,722 - BT0368 0.68 -0.3 453,722 - BT0368 0.68 -2.1 453,725 + BT0368 0.68 +0.3 453,858 + BT0368 0.75 -0.7 453,858 + BT0368 0.75 +0.3 453,858 + BT0368 0.75 -1.5 453,858 + BT0368 0.75 -0.7 453,862 + BT0368 0.75 -0.7 453,862 + BT0368 0.75 -0.5 453,863 - BT0368 0.75 +0.9 453,958 - BT0368 0.80 -2.7 453,962 + BT0368 0.80 +0.0 453,965 + BT0368 0.80 +1.5 453,966 - BT0368 0.80 -1.0 454,079 + BT0368 0.86 -1.2 454,118 - BT0368 0.88 +1.1 454,121 - BT0368 0.88 -0.4 454,144 - BT0368 0.89 -0.4 454,235 - -1.8 454,337 - -1.9 454,512 + BT0369 0.16 +1.1 454,512 + BT0369 0.16 -2.1 454,513 - BT0369 0.16 +0.6 454,579 + BT0369 0.23 -1.5 454,702 - BT0369 0.36 -2.1 454,707 + BT0369 0.36 +0.9 454,896 + BT0369 0.56 -1.5 454,903 - BT0369 0.57 -1.7 454,914 + BT0369 0.58 +0.1 454,923 + BT0369 0.59 -2.7 455,015 + BT0369 0.68 -1.7 455,016 - BT0369 0.68 +1.3 455,016 - +3.5 455,016 - BT0369 0.68 -1.4 455,016 - BT0369 0.68 +1.3 455,016 - BT0369 0.68 +0.3 455,043 + BT0369 0.71 -0.9 455,043 + BT0369 0.71 -0.5 455,068 + BT0369 0.74 -2.2 455,088 - BT0369 0.76 -1.8 455,188 - BT0369 0.86 -1.0 455,262 + -1.7 455,263 - +1.1 455,266 - +0.8 455,331 + -1.5 455,339 + -1.5 455,348 + -0.2 455,370 + -1.5 455,474 + -2.1 455,474 + -3.1 455,475 - +0.3 455,475 - -4.6 455,483 + -1.7 455,483 + -1.2 455,483 + -0.7 455,484 - -2.1 455,573 - BT0370 0.11 -2.7 455,622 + BT0370 0.16 -1.5 455,622 + BT0370 0.16 -2.4 455,704 - BT0370 0.23 -1.7 455,718 - BT0370 0.24 -2.6 455,763 - BT0370 0.28 -2.2 455,784 - BT0370 0.30 -3.8 455,784 - BT0370 0.30 -2.7 455,800 + BT0370 0.31 -2.4 455,851 + BT0370 0.35 -2.1 455,979 - BT0370 0.47 -1.0 456,180 - BT0370 0.64 -1.0 456,198 + BT0370 0.66 -1.7 456,198 + BT0370 0.66 +1.3 456,203 - BT0370 0.66 -2.7 456,203 - BT0370 0.66 -3.2 456,229 + BT0370 0.68 -2.1
Or see this region's nucleotide sequence