Experiment: Post-colonization (Day 8) - Cage4;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0154 and BT0155 are separated by 329 nucleotides BT0155 and BT0156 are separated by 29 nucleotides BT0156 and BT0157 are separated by 85 nucleotides
BT0154: BT0154 - putative periplasmic protease (NCBI ptt file), at 158,865 to 160,319
BT0154
BT0155: BT0155 - putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file), at 160,649 to 161,716
BT0155
BT0156: BT0156 - transcriptional regulator (NCBI ptt file), at 161,746 to 162,408
BT0156
BT0157: BT0157 - hypothetical protein (NCBI ptt file), at 162,494 to 163,084
BT0157
Position (kb) 160
161
162 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 159.656 kb on + strand, within BT0154 at 159.689 kb on + strand, within BT0154 at 159.689 kb on + strand, within BT0154 at 159.759 kb on - strand, within BT0154 at 159.850 kb on - strand, within BT0154 at 159.854 kb on + strand, within BT0154 at 159.855 kb on - strand, within BT0154 at 159.878 kb on - strand, within BT0154 at 159.878 kb on - strand, within BT0154 at 159.892 kb on + strand, within BT0154 at 159.962 kb on + strand, within BT0154 at 159.967 kb on + strand, within BT0154 at 159.967 kb on + strand, within BT0154 at 160.066 kb on - strand, within BT0154 at 160.076 kb on - strand, within BT0154 at 160.154 kb on + strand, within BT0154 at 160.154 kb on + strand, within BT0154 at 160.155 kb on - strand, within BT0154 at 160.156 kb on + strand, within BT0154 at 160.192 kb on + strand at 160.290 kb on + strand at 160.292 kb on + strand at 160.293 kb on - strand at 160.297 kb on - strand at 160.323 kb on - strand at 160.355 kb on - strand at 160.363 kb on + strand at 160.384 kb on - strand at 160.405 kb on + strand at 160.406 kb on - strand at 160.456 kb on - strand at 160.465 kb on + strand at 160.466 kb on - strand at 160.507 kb on + strand at 160.508 kb on - strand at 160.508 kb on - strand at 160.512 kb on + strand at 160.513 kb on - strand at 160.772 kb on - strand, within BT0155 at 160.823 kb on - strand, within BT0155 at 160.859 kb on - strand, within BT0155 at 160.865 kb on + strand, within BT0155 at 160.897 kb on + strand, within BT0155 at 160.997 kb on - strand, within BT0155 at 161.105 kb on + strand, within BT0155 at 161.105 kb on + strand, within BT0155 at 161.160 kb on + strand, within BT0155 at 161.160 kb on + strand, within BT0155 at 161.243 kb on + strand, within BT0155 at 161.244 kb on - strand, within BT0155 at 161.292 kb on + strand, within BT0155 at 161.345 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.427 kb on - strand, within BT0155 at 161.533 kb on - strand, within BT0155 at 161.533 kb on - strand, within BT0155 at 161.536 kb on + strand, within BT0155 at 161.540 kb on - strand, within BT0155 at 161.616 kb on + strand at 161.686 kb on - strand at 161.707 kb on - strand at 161.753 kb on + strand at 161.793 kb on - strand at 161.863 kb on - strand, within BT0156 at 161.891 kb on - strand, within BT0156 at 162.035 kb on + strand, within BT0156 at 162.118 kb on - strand, within BT0156 at 162.243 kb on + strand, within BT0156 at 162.246 kb on - strand, within BT0156 at 162.328 kb on + strand, within BT0156 at 162.328 kb on + strand, within BT0156 at 162.384 kb on + strand at 162.397 kb on - strand at 162.398 kb on + strand at 162.477 kb on - strand at 162.477 kb on - strand at 162.478 kb on + strand at 162.478 kb on + strand at 162.586 kb on + strand, within BT0157 at 162.587 kb on - strand, within BT0157 at 162.591 kb on - strand, within BT0157 at 162.620 kb on - strand, within BT0157 at 162.620 kb on - strand, within BT0157 at 162.623 kb on - strand, within BT0157
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage4;Mouse5 remove 159,656 + BT0154 0.54 -1.2 159,689 + BT0154 0.57 -1.6 159,689 + BT0154 0.57 +0.3 159,759 - BT0154 0.61 -1.7 159,850 - BT0154 0.68 -1.5 159,854 + BT0154 0.68 +1.8 159,855 - BT0154 0.68 +0.4 159,878 - BT0154 0.70 -0.2 159,878 - BT0154 0.70 -1.3 159,892 + BT0154 0.71 -0.9 159,962 + BT0154 0.75 +2.2 159,967 + BT0154 0.76 -0.7 159,967 + BT0154 0.76 -0.4 160,066 - BT0154 0.83 -1.8 160,076 - BT0154 0.83 +1.0 160,154 + BT0154 0.89 -0.6 160,154 + BT0154 0.89 -0.7 160,155 - BT0154 0.89 -0.3 160,156 + BT0154 0.89 -1.2 160,192 + -0.2 160,290 + -0.6 160,292 + -2.3 160,293 - -0.3 160,297 - -2.8 160,323 - -1.0 160,355 - +1.0 160,363 + +0.4 160,384 - -2.4 160,405 + -1.6 160,406 - -3.1 160,456 - -3.5 160,465 + +0.3 160,466 - -0.6 160,507 + +0.5 160,508 - -1.6 160,508 - -1.0 160,512 + -0.4 160,513 - -1.6 160,772 - BT0155 0.12 -2.3 160,823 - BT0155 0.16 -2.0 160,859 - BT0155 0.20 -3.0 160,865 + BT0155 0.20 -7.9 160,897 + BT0155 0.23 -2.0 160,997 - BT0155 0.33 -2.6 161,105 + BT0155 0.43 -4.7 161,105 + BT0155 0.43 -2.0 161,160 + BT0155 0.48 -2.2 161,160 + BT0155 0.48 -2.9 161,243 + BT0155 0.56 -1.6 161,244 - BT0155 0.56 -2.4 161,292 + BT0155 0.60 -3.4 161,345 - BT0155 0.65 -1.3 161,427 - BT0155 0.73 -3.1 161,427 - BT0155 0.73 -2.3 161,427 - BT0155 0.73 -3.2 161,533 - BT0155 0.83 -2.2 161,533 - BT0155 0.83 -2.7 161,536 + BT0155 0.83 -1.8 161,540 - BT0155 0.83 -3.2 161,616 + -1.6 161,686 - -2.2 161,707 - -4.3 161,753 + -0.8 161,793 - -2.0 161,863 - BT0156 0.18 -2.0 161,891 - BT0156 0.22 -1.8 162,035 + BT0156 0.44 -3.6 162,118 - BT0156 0.56 -1.6 162,243 + BT0156 0.75 -2.9 162,246 - BT0156 0.75 -3.3 162,328 + BT0156 0.88 -1.8 162,328 + BT0156 0.88 -2.0 162,384 + -2.0 162,397 - -3.3 162,398 + -4.4 162,477 - +3.0 162,477 - -0.8 162,478 + -3.7 162,478 + -1.0 162,586 + BT0157 0.16 -2.4 162,587 - BT0157 0.16 -1.2 162,591 - BT0157 0.16 -0.6 162,620 - BT0157 0.21 -1.0 162,620 - BT0157 0.21 -2.2 162,623 - BT0157 0.22 -0.0
Or see this region's nucleotide sequence