Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0657

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0656 and Psest_0657 overlap by 22 nucleotidesPsest_0657 and Psest_0658 overlap by 11 nucleotidesPsest_0658 and Psest_0659 are separated by 1 nucleotidesPsest_0659 and Psest_0660 are separated by 22 nucleotides Psest_0656: Psest_0656 - Methyl-accepting chemotaxis protein, at 712,498 to 714,144 _0656 Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369 _0657 Psest_0658: Psest_0658 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 716,359 to 716,700 _0658 Psest_0659: Psest_0659 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 716,702 to 717,067 _0659 Psest_0660: Psest_0660 - Methyl-accepting chemotaxis protein, at 717,090 to 718,175 _0660 Position (kb) 714 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 713.579 kb on + strand, within Psest_0656at 713.579 kb on + strand, within Psest_0656at 713.579 kb on + strand, within Psest_0656at 713.579 kb on + strand, within Psest_0656at 713.580 kb on - strand, within Psest_0656at 713.580 kb on - strand, within Psest_0656at 713.768 kb on + strand, within Psest_0656at 713.963 kb on + strand, within Psest_0656at 713.963 kb on + strand, within Psest_0656at 713.963 kb on + strand, within Psest_0656at 713.963 kb on + strand, within Psest_0656at 713.964 kb on - strand, within Psest_0656at 713.964 kb on - strand, within Psest_0656at 713.964 kb on - strand, within Psest_0656at 713.964 kb on - strand, within Psest_0656at 714.008 kb on + strandat 714.008 kb on + strandat 714.008 kb on + strandat 714.008 kb on + strandat 714.008 kb on + strandat 714.252 kb on - strandat 714.580 kb on + strand, within Psest_0657at 714.580 kb on + strand, within Psest_0657at 714.580 kb on + strand, within Psest_0657at 714.581 kb on - strand, within Psest_0657at 714.581 kb on - strand, within Psest_0657at 714.581 kb on - strand, within Psest_0657at 714.581 kb on - strand, within Psest_0657at 714.929 kb on - strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.597 kb on + strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.598 kb on - strand, within Psest_0657at 715.720 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.737 kb on + strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 715.738 kb on - strand, within Psest_0657at 716.287 kb on + strandat 716.287 kb on + strandat 716.288 kb on - strandat 716.288 kb on - strandat 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.630 kb on + strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 716.631 kb on - strand, within Psest_0658at 717.171 kb on + strandat 717.171 kb on + strandat 717.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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713,579 + Psest_0656 0.66 -0.0
713,579 + Psest_0656 0.66 +0.5
713,579 + Psest_0656 0.66 +0.9
713,579 + Psest_0656 0.66 +0.7
713,580 - Psest_0656 0.66 -1.4
713,580 - Psest_0656 0.66 -0.6
713,768 + Psest_0656 0.77 +5.1
713,963 + Psest_0656 0.89 +1.9
713,963 + Psest_0656 0.89 +0.2
713,963 + Psest_0656 0.89 -1.6
713,963 + Psest_0656 0.89 -0.6
713,964 - Psest_0656 0.89 +1.1
713,964 - Psest_0656 0.89 +0.8
713,964 - Psest_0656 0.89 +2.6
713,964 - Psest_0656 0.89 -0.1
714,008 + +0.6
714,008 + -0.3
714,008 + +0.2
714,008 + -1.6
714,008 + -1.0
714,252 - -0.6
714,580 + Psest_0657 0.20 -0.3
714,580 + Psest_0657 0.20 +0.3
714,580 + Psest_0657 0.20 -0.5
714,581 - Psest_0657 0.20 +0.7
714,581 - Psest_0657 0.20 +0.7
714,581 - Psest_0657 0.20 -0.5
714,581 - Psest_0657 0.20 -1.2
714,929 - Psest_0657 0.36 +0.3
715,597 + Psest_0657 0.66 +0.1
715,597 + Psest_0657 0.66 +0.3
715,597 + Psest_0657 0.66 -0.5
715,597 + Psest_0657 0.66 -0.6
715,598 - Psest_0657 0.66 -0.1
715,598 - Psest_0657 0.66 -0.5
715,598 - Psest_0657 0.66 +0.4
715,598 - Psest_0657 0.66 +1.6
715,720 + Psest_0657 0.71 -0.6
715,737 + Psest_0657 0.72 +1.9
715,737 + Psest_0657 0.72 +0.4
715,737 + Psest_0657 0.72 +0.4
715,737 + Psest_0657 0.72 +0.1
715,737 + Psest_0657 0.72 -1.3
715,737 + Psest_0657 0.72 +0.4
715,738 - Psest_0657 0.72 -0.2
715,738 - Psest_0657 0.72 -0.3
715,738 - Psest_0657 0.72 -0.3
715,738 - Psest_0657 0.72 -0.9
715,738 - Psest_0657 0.72 -3.7
715,738 - Psest_0657 0.72 -0.5
715,738 - Psest_0657 0.72 +0.3
715,738 - Psest_0657 0.72 -1.3
715,738 - Psest_0657 0.72 +3.2
715,738 - Psest_0657 0.72 +0.2
715,738 - Psest_0657 0.72 -0.1
715,738 - Psest_0657 0.72 -0.8
715,738 - Psest_0657 0.72 +0.8
716,287 + -1.2
716,287 + +1.0
716,288 - +0.5
716,288 - -0.8
716,630 + Psest_0658 0.79 +0.9
716,630 + Psest_0658 0.79 -1.1
716,630 + Psest_0658 0.79 -0.2
716,630 + Psest_0658 0.79 -1.0
716,630 + Psest_0658 0.79 -1.3
716,630 + Psest_0658 0.79 +1.0
716,630 + Psest_0658 0.79 +1.2
716,630 + Psest_0658 0.79 -0.2
716,630 + Psest_0658 0.79 -0.4
716,630 + Psest_0658 0.79 +0.7
716,630 + Psest_0658 0.79 +1.8
716,630 + Psest_0658 0.79 +1.1
716,630 + Psest_0658 0.79 +2.2
716,630 + Psest_0658 0.79 -0.9
716,631 - Psest_0658 0.80 -0.0
716,631 - Psest_0658 0.80 +1.2
716,631 - Psest_0658 0.80 -0.1
716,631 - Psest_0658 0.80 +0.3
716,631 - Psest_0658 0.80 -0.8
716,631 - Psest_0658 0.80 -0.8
716,631 - Psest_0658 0.80 +0.3
716,631 - Psest_0658 0.80 -1.2
716,631 - Psest_0658 0.80 +0.7
716,631 - Psest_0658 0.80 -1.3
716,631 - Psest_0658 0.80 -0.3
716,631 - Psest_0658 0.80 -1.9
717,171 + -2.8
717,171 + +0.4
717,171 + -1.1

Or see this region's nucleotide sequence