Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1540 and Psest_1541 overlap by 4 nucleotides Psest_1541 and Psest_1542 overlap by 4 nucleotides Psest_1542 and Psest_1543 are separated by 179 nucleotides
Psest_1540: Psest_1540 - biotin-dependent carboxylase uncharacterized domain, at 1,639,470 to 1,640,381
_1540
Psest_1541: Psest_1541 - TIGR00370 family protein, at 1,640,378 to 1,641,085
_1541
Psest_1542: Psest_1542 - Uncharacterized proteins, homologs of lactam utilization protein B, at 1,641,082 to 1,641,831
_1542
Psest_1543: Psest_1543 - Predicted transcription regulator, contains HTH domain (MarR family), at 1,642,011 to 1,642,538
_1543
Position (kb)
1640
1641
1642 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1639.471 kb on + strand at 1639.471 kb on + strand at 1639.471 kb on + strand at 1639.471 kb on + strand at 1639.472 kb on - strand at 1639.472 kb on - strand at 1639.472 kb on - strand at 1639.472 kb on - strand at 1639.840 kb on - strand, within Psest_1540 at 1639.840 kb on - strand, within Psest_1540 at 1639.840 kb on - strand, within Psest_1540 at 1640.528 kb on + strand, within Psest_1541 at 1640.528 kb on + strand, within Psest_1541 at 1640.552 kb on + strand, within Psest_1541 at 1640.706 kb on + strand, within Psest_1541 at 1640.706 kb on + strand, within Psest_1541 at 1640.706 kb on + strand, within Psest_1541 at 1640.707 kb on - strand, within Psest_1541 at 1640.707 kb on - strand, within Psest_1541 at 1640.914 kb on - strand, within Psest_1541 at 1640.934 kb on + strand, within Psest_1541 at 1640.934 kb on + strand, within Psest_1541 at 1640.935 kb on - strand, within Psest_1541 at 1640.935 kb on - strand, within Psest_1541 at 1640.951 kb on + strand, within Psest_1541 at 1640.951 kb on + strand, within Psest_1541 at 1640.951 kb on + strand, within Psest_1541 at 1640.951 kb on + strand, within Psest_1541 at 1640.951 kb on + strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.952 kb on - strand, within Psest_1541 at 1640.954 kb on + strand, within Psest_1541 at 1640.954 kb on + strand, within Psest_1541 at 1640.954 kb on + strand, within Psest_1541 at 1640.955 kb on - strand, within Psest_1541 at 1641.010 kb on + strand, within Psest_1541 at 1641.010 kb on + strand, within Psest_1541 at 1641.011 kb on - strand, within Psest_1541 at 1641.011 kb on - strand, within Psest_1541 at 1641.011 kb on - strand, within Psest_1541 at 1641.312 kb on - strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.328 kb on + strand, within Psest_1542 at 1641.329 kb on - strand, within Psest_1542 at 1641.329 kb on - strand, within Psest_1542 at 1641.485 kb on + strand, within Psest_1542 at 1641.485 kb on + strand, within Psest_1542 at 1641.485 kb on + strand, within Psest_1542 at 1641.486 kb on - strand, within Psest_1542 at 1641.486 kb on - strand, within Psest_1542 at 1641.510 kb on - strand, within Psest_1542 at 1641.654 kb on + strand, within Psest_1542 at 1641.817 kb on + strand at 1641.818 kb on - strand at 1641.818 kb on - strand at 1641.818 kb on - strand at 1641.820 kb on + strand at 1641.820 kb on + strand at 1641.820 kb on + strand at 1641.821 kb on - strand at 1641.881 kb on + strand at 1641.881 kb on + strand at 1641.892 kb on + strand at 1641.897 kb on + strand at 1641.898 kb on - strand at 1641.904 kb on - strand at 1641.904 kb on - strand at 1641.930 kb on + strand at 1641.930 kb on + strand at 1641.931 kb on - strand at 1641.953 kb on + strand at 1641.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,639,471 + +1.7 1,639,471 + -1.2 1,639,471 + -0.7 1,639,471 + -0.2 1,639,472 - -0.3 1,639,472 - -2.3 1,639,472 - +0.7 1,639,472 - +0.4 1,639,840 - Psest_1540 0.41 +0.0 1,639,840 - Psest_1540 0.41 -1.5 1,639,840 - Psest_1540 0.41 -0.5 1,640,528 + Psest_1541 0.21 +1.3 1,640,528 + Psest_1541 0.21 -1.3 1,640,552 + Psest_1541 0.25 -1.7 1,640,706 + Psest_1541 0.46 +0.1 1,640,706 + Psest_1541 0.46 -2.3 1,640,706 + Psest_1541 0.46 -0.9 1,640,707 - Psest_1541 0.46 +0.0 1,640,707 - Psest_1541 0.46 -1.7 1,640,914 - Psest_1541 0.76 -0.5 1,640,934 + Psest_1541 0.79 -3.7 1,640,934 + Psest_1541 0.79 -0.0 1,640,935 - Psest_1541 0.79 -0.2 1,640,935 - Psest_1541 0.79 -0.6 1,640,951 + Psest_1541 0.81 -0.9 1,640,951 + Psest_1541 0.81 +0.1 1,640,951 + Psest_1541 0.81 -1.3 1,640,951 + Psest_1541 0.81 -1.0 1,640,951 + Psest_1541 0.81 -1.7 1,640,952 - Psest_1541 0.81 -1.4 1,640,952 - Psest_1541 0.81 -1.0 1,640,952 - Psest_1541 0.81 +0.0 1,640,952 - Psest_1541 0.81 +0.1 1,640,952 - Psest_1541 0.81 +0.6 1,640,952 - Psest_1541 0.81 -1.7 1,640,952 - Psest_1541 0.81 +0.6 1,640,952 - Psest_1541 0.81 -2.2 1,640,954 + Psest_1541 0.81 -1.1 1,640,954 + Psest_1541 0.81 -0.0 1,640,954 + Psest_1541 0.81 +0.7 1,640,955 - Psest_1541 0.81 -2.6 1,641,010 + Psest_1541 0.89 -0.1 1,641,010 + Psest_1541 0.89 -2.0 1,641,011 - Psest_1541 0.89 -2.3 1,641,011 - Psest_1541 0.89 -0.1 1,641,011 - Psest_1541 0.89 +1.1 1,641,312 - Psest_1542 0.31 -0.4 1,641,328 + Psest_1542 0.33 -0.9 1,641,328 + Psest_1542 0.33 -0.7 1,641,328 + Psest_1542 0.33 +0.2 1,641,328 + Psest_1542 0.33 -0.1 1,641,328 + Psest_1542 0.33 -1.4 1,641,328 + Psest_1542 0.33 -2.7 1,641,329 - Psest_1542 0.33 -0.7 1,641,329 - Psest_1542 0.33 -0.9 1,641,485 + Psest_1542 0.54 -0.3 1,641,485 + Psest_1542 0.54 -0.4 1,641,485 + Psest_1542 0.54 +0.5 1,641,486 - Psest_1542 0.54 -0.9 1,641,486 - Psest_1542 0.54 -2.4 1,641,510 - Psest_1542 0.57 +1.1 1,641,654 + Psest_1542 0.76 +2.1 1,641,817 + -0.1 1,641,818 - +0.5 1,641,818 - +1.1 1,641,818 - -0.9 1,641,820 + -0.7 1,641,820 + +1.1 1,641,820 + -2.0 1,641,821 - -0.1 1,641,881 + +0.1 1,641,881 + +0.3 1,641,892 + +0.3 1,641,897 + -3.1 1,641,898 - +0.5 1,641,904 - +1.2 1,641,904 - +1.1 1,641,930 + -0.7 1,641,930 + -0.9 1,641,931 - +0.1 1,641,953 + +1.7 1,641,954 - +1.3
Or see this region's nucleotide sequence