Experiment: Post-colonization (Day 6) - Cage6;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4572 and BT4573 are separated by 179 nucleotides BT4573 and BT4574 are separated by 20 nucleotides BT4574 and BT4575 are separated by 107 nucleotides
BT4572: BT4572 - enolase (NCBI ptt file), at 5,993,128 to 5,994,408
BT4572
BT4573: BT4573 - conserved hypothetical protein (NCBI ptt file), at 5,994,588 to 5,995,250
BT4573
BT4574: BT4574 - conserved hypothetical protein (NCBI ptt file), at 5,995,271 to 5,995,645
BT4574
BT4575: BT4575 - hypothetical protein (NCBI ptt file), at 5,995,753 to 5,996,529
BT4575
Position (kb) 5994
5995
5996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5993.643 kb on + strand, within BT4572 at 5993.644 kb on - strand, within BT4572 at 5993.644 kb on - strand, within BT4572 at 5993.645 kb on + strand, within BT4572 at 5993.645 kb on + strand, within BT4572 at 5993.652 kb on - strand, within BT4572 at 5993.652 kb on - strand, within BT4572 at 5993.656 kb on - strand, within BT4572 at 5993.857 kb on + strand, within BT4572 at 5993.967 kb on + strand, within BT4572 at 5993.993 kb on + strand, within BT4572 at 5993.994 kb on - strand, within BT4572 at 5993.997 kb on + strand, within BT4572 at 5993.998 kb on - strand, within BT4572 at 5994.015 kb on - strand, within BT4572 at 5994.038 kb on + strand, within BT4572 at 5994.070 kb on + strand, within BT4572 at 5994.070 kb on + strand, within BT4572 at 5994.095 kb on - strand, within BT4572 at 5994.114 kb on + strand, within BT4572 at 5994.169 kb on - strand, within BT4572 at 5994.334 kb on + strand at 5994.349 kb on + strand at 5994.427 kb on + strand at 5994.474 kb on - strand at 5994.475 kb on + strand at 5994.479 kb on + strand at 5994.480 kb on - strand at 5994.484 kb on - strand at 5994.505 kb on + strand at 5994.506 kb on - strand at 5994.516 kb on - strand at 5994.582 kb on - strand at 5994.602 kb on + strand at 5994.671 kb on + strand, within BT4573 at 5994.681 kb on + strand, within BT4573 at 5994.702 kb on - strand, within BT4573 at 5994.832 kb on - strand, within BT4573 at 5995.011 kb on + strand, within BT4573 at 5995.013 kb on + strand, within BT4573 at 5995.090 kb on + strand, within BT4573 at 5995.091 kb on - strand, within BT4573 at 5995.181 kb on + strand, within BT4573 at 5995.257 kb on + strand at 5995.257 kb on + strand at 5995.262 kb on - strand at 5995.290 kb on + strand at 5995.300 kb on - strand at 5995.306 kb on + strand at 5995.306 kb on + strand at 5995.307 kb on - strand at 5995.307 kb on - strand at 5995.334 kb on + strand, within BT4574 at 5995.335 kb on - strand, within BT4574 at 5995.338 kb on + strand, within BT4574 at 5995.517 kb on + strand, within BT4574 at 5995.645 kb on + strand at 5995.934 kb on + strand, within BT4575 at 5995.934 kb on + strand, within BT4575 at 5995.935 kb on - strand, within BT4575 at 5995.935 kb on - strand, within BT4575 at 5996.023 kb on - strand, within BT4575 at 5996.024 kb on + strand, within BT4575 at 5996.024 kb on + strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.027 kb on - strand, within BT4575 at 5996.091 kb on + strand, within BT4575 at 5996.231 kb on - strand, within BT4575
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 6) - Cage6;Mouse2 remove 5,993,643 + BT4572 0.40 -1.8 5,993,644 - BT4572 0.40 +0.4 5,993,644 - BT4572 0.40 -2.4 5,993,645 + BT4572 0.40 -2.8 5,993,645 + BT4572 0.40 -0.4 5,993,652 - BT4572 0.41 -2.2 5,993,652 - BT4572 0.41 -1.0 5,993,656 - BT4572 0.41 -2.4 5,993,857 + BT4572 0.57 +1.6 5,993,967 + BT4572 0.65 -1.2 5,993,993 + BT4572 0.68 -1.5 5,993,994 - BT4572 0.68 +0.1 5,993,997 + BT4572 0.68 -3.0 5,993,998 - BT4572 0.68 -1.5 5,994,015 - BT4572 0.69 -2.0 5,994,038 + BT4572 0.71 -1.0 5,994,070 + BT4572 0.74 +0.6 5,994,070 + BT4572 0.74 -1.9 5,994,095 - BT4572 0.75 -1.6 5,994,114 + BT4572 0.77 +1.6 5,994,169 - BT4572 0.81 -1.0 5,994,334 + -1.2 5,994,349 + -0.0 5,994,427 + -0.3 5,994,474 - -2.1 5,994,475 + -2.6 5,994,479 + +1.2 5,994,480 - -2.7 5,994,484 - -0.6 5,994,505 + -0.4 5,994,506 - -0.8 5,994,516 - +1.6 5,994,582 - -0.4 5,994,602 + -0.6 5,994,671 + BT4573 0.13 -0.4 5,994,681 + BT4573 0.14 +0.3 5,994,702 - BT4573 0.17 -1.0 5,994,832 - BT4573 0.37 -2.2 5,995,011 + BT4573 0.64 -1.8 5,995,013 + BT4573 0.64 +0.6 5,995,090 + BT4573 0.76 -2.5 5,995,091 - BT4573 0.76 -1.4 5,995,181 + BT4573 0.89 -0.8 5,995,257 + +0.4 5,995,257 + -1.2 5,995,262 - -1.2 5,995,290 + -0.6 5,995,300 - +0.6 5,995,306 + -1.0 5,995,306 + +0.6 5,995,307 - +0.2 5,995,307 - -0.7 5,995,334 + BT4574 0.17 -1.1 5,995,335 - BT4574 0.17 -1.9 5,995,338 + BT4574 0.18 +0.8 5,995,517 + BT4574 0.66 +0.3 5,995,645 + -0.4 5,995,934 + BT4575 0.23 -1.6 5,995,934 + BT4575 0.23 +0.6 5,995,935 - BT4575 0.23 -1.9 5,995,935 - BT4575 0.23 +2.3 5,996,023 - BT4575 0.35 -1.2 5,996,024 + BT4575 0.35 +1.6 5,996,024 + BT4575 0.35 +0.2 5,996,025 - BT4575 0.35 +1.6 5,996,025 - BT4575 0.35 +0.8 5,996,025 - BT4575 0.35 -1.8 5,996,025 - BT4575 0.35 -1.9 5,996,026 + BT4575 0.35 +0.6 5,996,026 + BT4575 0.35 -0.6 5,996,026 + BT4575 0.35 +4.4 5,996,027 - BT4575 0.35 -1.5 5,996,091 + BT4575 0.44 -1.5 5,996,231 - BT4575 0.62 -1.0
Or see this region's nucleotide sequence