Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4517

Experiment: Post-colonization (Day 6) - Cage6;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 6) - Cage6;Mouse2
5,933,262	-		BT4516	0.47	-0.4
5,933,288	-		BT4516	0.48	+0.0
5,933,486	+		BT4516	0.60	+1.6
5,933,490	+		BT4516	0.60	-1.6
5,933,519	-		BT4516	0.61	-2.8
5,933,601	+		BT4516	0.66	+0.0
5,933,601	+		BT4516	0.66	-1.9
5,933,624	-		BT4516	0.67	-0.2
5,933,624	-		BT4516	0.67	-1.2
5,933,629	-		BT4516	0.68	-1.2
5,933,631	-		BT4516	0.68	-2.3
5,933,631	-		BT4516	0.68	-3.4
5,933,631	-		BT4516	0.68	-1.5
5,933,635	-		BT4516	0.68	-1.1
5,933,658	+		BT4516	0.69	-1.6
5,933,659	-		BT4516	0.69	-0.6
5,933,667	-		BT4516	0.70	+0.3
5,933,667	-		BT4516	0.70	+0.0
5,933,687	+		BT4516	0.71	-1.4
5,933,706	-		BT4516	0.72	-0.2
5,933,772	+		BT4516	0.76	-1.2
5,933,773	-		BT4516	0.76	-1.2
5,933,773	-		BT4516	0.76	-1.6
5,933,802	+		BT4516	0.78	+1.6
5,933,837	+		BT4516	0.80	+0.6
5,933,864	+		BT4516	0.81	+0.8
5,933,871	+		BT4516	0.82	-1.0
5,933,871	+		BT4516	0.82	+0.9
5,933,872	-		BT4516	0.82	-1.1
5,933,872	-		BT4516	0.82	-1.4
5,933,872	-		BT4516	0.82	-0.4
5,933,873	+		BT4516	0.82	-1.6
5,933,876	-		BT4516	0.82	-1.0
5,933,876	-		BT4516	0.82	+1.4
5,933,876	-		BT4516	0.82	+0.3
5,933,876	-		BT4516	0.82	+0.4
5,933,933	+		BT4516	0.85	-1.9
5,933,971	-		BT4516	0.87	-1.6
5,934,034	-				-2.5
5,934,081	-				-3.0
5,934,091	+				-1.6
5,934,091	+				-0.1
5,934,240	-				-2.6
5,934,244	-				+0.4
5,934,337	+				-1.5
5,934,337	+				-1.7
5,934,345	+				-3.3
5,934,346	-				-1.7
5,934,437	+				-1.5
5,934,437	+				-0.7
5,934,447	+				-1.3
5,934,448	-				+1.1
5,934,503	-				-1.2
5,934,523	-				+0.5
5,934,523	-				-0.4
5,934,627	-		BT4517	0.14	-0.1
5,934,627	-		BT4517	0.14	-1.7
5,934,627	-		BT4517	0.14	+0.4
5,934,629	+		BT4517	0.14	-0.7
5,934,629	+		BT4517	0.14	-0.4
5,934,629	+				-1.6
5,934,630	-		BT4517	0.14	+0.9
5,934,818	-		BT4517	0.21	-1.9
5,934,818	-		BT4517	0.21	+0.3
5,934,819	+		BT4517	0.21	+1.9
5,934,855	+		BT4517	0.22	-1.0
5,935,014	+		BT4517	0.28	-1.2
5,935,014	+		BT4517	0.28	-1.1
5,935,015	-		BT4517	0.28	-2.1
5,935,068	+		BT4517	0.30	+1.6
5,935,115	+		BT4517	0.32	-0.4
5,935,116	-		BT4517	0.32	-0.7
5,935,159	-		BT4517	0.33	+0.9
5,935,167	+		BT4517	0.34	-1.7
5,935,170	-		BT4517	0.34	-0.3
5,935,170	-		BT4517	0.34	+1.0
5,935,211	+		BT4517	0.35	+0.4
5,935,212	-		BT4517	0.35	-1.0
5,935,313	+		BT4517	0.39	+1.0
5,935,357	+		BT4517	0.41	-1.2
5,935,358	-		BT4517	0.41	-0.5
5,935,360	-		BT4517	0.41	-0.6
5,935,433	-		BT4517	0.43	+0.0
5,935,434	+		BT4517	0.44	+0.1
5,935,434	+		BT4517	0.44	-0.6
5,935,454	+		BT4517	0.44	-3.1
5,935,459	-		BT4517	0.44	-1.7
5,935,485	+		BT4517	0.45	+1.0
5,935,523	+		BT4517	0.47	-1.6
5,935,524	-		BT4517	0.47	+0.3
5,935,530	-		BT4517	0.47	+0.7
5,935,560	+		BT4517	0.48	-0.5
5,935,560	+		BT4517	0.48	+0.6
5,935,604	-		BT4517	0.50	+1.3
5,935,622	+		BT4517	0.50	+0.7
5,935,623	-		BT4517	0.51	-1.2
5,935,647	+		BT4517	0.51	+0.2
5,935,653	+		BT4517	0.52	-0.5
5,935,658	+		BT4517	0.52	+1.5
5,935,669	-		BT4517	0.52	-0.2
5,935,669	-		BT4517	0.52	+1.0
5,935,777	-		BT4517	0.56	-0.9
5,935,817	+		BT4517	0.58	+0.9
5,935,818	-		BT4517	0.58	+0.0
5,935,870	+		BT4517	0.60	-0.9
5,935,871	-		BT4517	0.60	+0.2
5,935,871	-		BT4517	0.60	-1.0
5,935,871	-		BT4517	0.60	-0.4
5,935,871	-		BT4517	0.60	+0.4
5,935,872	+		BT4517	0.60	-2.3
5,935,900	-		BT4517	0.61	+0.1
5,936,011	-		BT4517	0.65	-1.4
5,936,045	+		BT4517	0.66	-0.1
5,936,067	+		BT4517	0.67	-0.7
5,936,093	-		BT4517	0.68	-0.8
5,936,129	-		BT4517	0.69	-1.4
5,936,207	+		BT4517	0.72	+0.0
5,936,208	-		BT4517	0.72	-0.8
5,936,210	-		BT4517	0.72	-1.1
5,936,262	+		BT4517	0.74	+1.6
5,936,274	+		BT4517	0.75	+0.4
5,936,275	-		BT4517	0.75	+0.9
5,936,275	-		BT4517	0.75	-1.6
5,936,275	-		BT4517	0.75	+0.2
5,936,321	-		BT4517	0.76	+1.6
5,936,329	-		BT4517	0.77	-1.0
5,936,329	-		BT4517	0.77	-0.6
5,936,373	+		BT4517	0.78	-1.1
5,936,380	-		BT4517	0.78	-0.4
5,936,472	-		BT4517	0.82	-0.4
5,936,472	-		BT4517	0.82	+0.1
5,936,483	-		BT4517	0.82	-2.2
5,936,509	+		BT4517	0.83	-0.7
5,936,510	-		BT4517	0.83	+1.2
5,936,514	+		BT4517	0.83	+0.4
5,936,515	-		BT4517	0.83	+0.3
5,936,626	-		BT4517	0.88	-1.2
5,936,661	-		BT4517	0.89	-2.0
5,936,661	-		BT4517	0.89	-0.2
5,936,709	-				-0.7
5,936,709	-				+0.6
5,936,712	+				-0.4
5,936,713	-				+1.6
5,936,716	-				-0.6
5,936,721	+				+1.6
5,936,806	+				-1.0
5,936,806	+				+0.6
5,936,818	-				-2.2
5,936,842	-				-2.0
5,937,059	-				-0.3
5,937,059	-				-2.0
5,937,060	+				-0.2
5,937,104	-				+1.0
5,937,177	-		BT4518	0.15	-1.0
5,937,247	-		BT4518	0.20	+0.3
5,937,364	-		BT4518	0.28	+0.6
5,937,365	-		BT4518	0.28	+1.4
5,937,452	+		BT4518	0.34	-1.9
5,937,453	-		BT4518	0.34	-2.0
5,937,459	+		BT4518	0.35	+0.0
5,937,459	+		BT4518	0.35	+0.3
5,937,460	-		BT4518	0.35	-2.0
5,937,523	-		BT4518	0.39	-1.0
5,937,523	-		BT4518	0.39	-1.8
5,937,536	-		BT4518	0.40	+2.2
5,937,646	+		BT4518	0.48	-0.6
5,937,658	-		BT4518	0.49	+0.0
5,937,663	+		BT4518	0.49	-1.2
5,937,777	+		BT4518	0.57	+0.2
5,937,796	+		BT4518	0.59	-1.0
5,937,814	-		BT4518	0.60	-1.3
5,937,821	+		BT4518	0.60	-2.2
5,937,847	-		BT4518	0.62	+1.6
5,937,957	+		BT4518	0.70	-2.7
5,937,960	+		BT4518	0.70	+0.6