Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2443

Experiment: Post-colonization (Day 6) - Cage6;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 6) - Cage6;Mouse2
3,058,840	-		BT2442	0.21	-0.7
3,058,845	-		BT2442	0.22	-0.5
3,058,852	+		BT2442	0.22	-0.9
3,058,852	+		BT2442	0.22	+0.0
3,058,852	+		BT2442	0.22	-0.5
3,058,852	+		BT2442	0.22	-1.7
3,058,852	+		BT2442	0.22	+0.1
3,058,853	-		BT2442	0.22	-0.3
3,058,932	-		BT2442	0.30	+0.1
3,059,013	+		BT2442	0.37	+0.2
3,059,013	+		BT2442	0.37	-1.1
3,059,016	-		BT2442	0.37	+0.2
3,059,179	+		BT2442	0.52	+0.5
3,059,180	-		BT2442	0.52	+0.5
3,059,180	-		BT2442	0.52	-1.0
3,059,232	+		BT2442	0.57	-1.6
3,059,232	+		BT2442	0.57	+0.5
3,059,244	+		BT2442	0.58	-1.9
3,059,254	+		BT2442	0.59	+1.1
3,059,295	-		BT2442	0.63	-0.2
3,059,316	+		BT2442	0.65	+1.5
3,059,317	-				-0.5
3,059,327	+		BT2442	0.66	+1.5
3,059,327	+		BT2442	0.66	-3.8
3,059,362	+		BT2442	0.69	+0.7
3,059,362	+		BT2442	0.69	-0.4
3,059,387	-		BT2442	0.71	-3.8
3,059,397	+		BT2442	0.72	-0.8
3,059,397	+		BT2442	0.72	-1.6
3,059,409	+		BT2442	0.73	-0.3
3,059,499	-		BT2442	0.81	+1.0
3,059,499	-		BT2442	0.81	-2.1
3,059,524	+		BT2442	0.84	-0.3
3,059,524	+		BT2442	0.84	-1.1
3,059,525	-		BT2442	0.84	-1.1
3,059,534	-		BT2442	0.85	-0.5
3,059,609	-				+0.2
3,059,650	+				-1.3
3,059,654	-				-0.3
3,059,658	-				-1.3
3,059,660	+				+1.2
3,059,660	+				-1.1
3,059,661	-				+1.5
3,059,719	-				-2.5
3,059,721	+				+0.0
3,059,726	+				-0.6
3,059,727	-				-0.9
3,059,783	-				-0.7
3,059,850	+				-0.9
3,059,850	+				-0.9
3,059,919	+				-1.0
3,059,956	+		BT2443	0.11	+0.3
3,059,956	+		BT2443	0.11	+0.3
3,059,956	+		BT2443	0.11	+0.1
3,059,957	-		BT2443	0.11	+0.8
3,059,961	+		BT2443	0.11	-0.8
3,060,011	+		BT2443	0.15	-1.3
3,060,011	+		BT2443	0.15	+0.7
3,060,081	-		BT2443	0.21	+0.5
3,060,105	-		BT2443	0.23	-1.3
3,060,105	-		BT2443	0.23	+1.5
3,060,113	-		BT2443	0.23	-2.2
3,060,115	+		BT2443	0.24	+1.1
3,060,116	-		BT2443	0.24	+0.9
3,060,119	+		BT2443	0.24	-0.1
3,060,122	-		BT2443	0.24	-1.1
3,060,210	-		BT2443	0.31	-0.5
3,060,246	+		BT2443	0.34	-2.3
3,060,246	+		BT2443	0.34	-1.7
3,060,246	+		BT2443	0.34	-0.9
3,060,318	-		BT2443	0.40	-0.4
3,060,335	+		BT2443	0.41	+1.5
3,060,339	+		BT2443	0.42	+1.0
3,060,340	-		BT2443	0.42	-0.5
3,060,362	-		BT2443	0.43	+3.1
3,060,371	+		BT2443	0.44	-1.1
3,060,371	+		BT2443	0.44	-3.2
3,060,372	-		BT2443	0.44	+0.2
3,060,372	-		BT2443	0.44	-1.2
3,060,409	+		BT2443	0.47	+0.5
3,060,410	-		BT2443	0.47	-0.5
3,060,438	-		BT2443	0.50	-0.3
3,060,446	+		BT2443	0.50	-0.1
3,060,446	+		BT2443	0.50	-3.2
3,060,447	-		BT2443	0.50	+0.4
3,060,462	-		BT2443	0.51	-1.1
3,060,462	-		BT2443	0.51	-1.9
3,060,511	+		BT2443	0.55	+0.1
3,060,531	+		BT2443	0.57	-1.3
3,060,532	-		BT2443	0.57	-1.5
3,060,532	-		BT2443	0.57	-0.6
3,060,554	+		BT2443	0.59	-1.4
3,060,572	+		BT2443	0.60	-0.0
3,060,573	-		BT2443	0.60	+1.8
3,060,582	-		BT2443	0.61	-0.1
3,060,640	-		BT2443	0.66	+2.0
3,060,670	-		BT2443	0.68	-0.7
3,060,676	-		BT2443	0.69	-0.9
3,060,706	-		BT2443	0.71	+0.3
3,060,709	+		BT2443	0.71	-0.6
3,060,709	+		BT2443	0.71	-0.2
3,060,710	-		BT2443	0.71	+0.5
3,060,738	-		BT2443	0.74	-2.5
3,060,755	+		BT2443	0.75	-0.8
3,060,795	-		BT2443	0.78	+0.5
3,060,795	-		BT2443	0.78	+1.1
3,060,832	+		BT2443	0.81	-0.5
3,060,833	-		BT2443	0.81	+1.5
3,060,913	-		BT2443	0.88	-1.0
3,060,918	-		BT2443	0.88	+0.1
3,060,927	-		BT2443	0.89	-0.8
3,061,010	+				-0.0
3,061,010	+				-0.9
3,061,011	-				+0.1
3,061,011	-				+0.7
3,061,011	-				-0.8
3,061,011	-				+0.9
3,061,012	+				-0.1
3,061,012	+				+0.7
3,061,013	-				-2.1
3,061,055	-				-0.9
3,061,109	-				+0.9
3,061,112	-				+1.5
3,061,112	-				+1.5
3,061,115	-				+0.3
3,061,115	-				-0.3
3,061,115	-				-0.6
3,061,115	-				-0.5
3,061,119	-				-0.9
3,061,131	+				-2.0
3,061,132	-				+0.8
3,061,132	-				+0.9
3,061,160	+				-0.7
3,061,194	+				+1.5
3,061,194	+				-2.7
3,061,217	+				-2.9
3,061,217	+				-2.3
3,061,236	+				+1.8
3,061,237	-				-1.3
3,061,280	+				-0.3
3,061,281	-				-1.7
3,061,295	+				-0.9
3,061,305	-				-1.3
3,061,350	-				-0.8
3,061,350	-				-0.7
3,061,387	-				-1.3
3,061,406	-				-3.3
3,061,408	+				+1.4
3,061,448	-				+0.2
3,061,465	+				+0.5
3,061,472	+				-1.4
3,061,483	+				-2.0
3,061,492	+				-0.8
3,061,496	+				-0.7
3,061,546	+		BT2444	0.14	-0.3
3,061,552	+		BT2444	0.14	-0.8
3,061,559	-		BT2444	0.15	+0.1
3,061,590	-		BT2444	0.17	-3.3
3,061,639	+		BT2444	0.21	+0.7
3,061,648	+		BT2444	0.21	-0.3
3,061,648	+		BT2444	0.21	-3.3
3,061,649	-		BT2444	0.22	-1.7
3,061,649	-		BT2444	0.22	-0.7
3,061,650	+		BT2444	0.22	-3.5
3,061,651	-		BT2444	0.22	-0.5
3,061,652	+		BT2444	0.22	-2.0
3,061,652	+		BT2444	0.22	-1.7
3,061,653	-		BT2444	0.22	-2.1
3,061,653	-		BT2444	0.22	+0.9
3,061,654	+		BT2444	0.22	-0.6
3,061,655	-		BT2444	0.22	+0.7
3,061,655	-		BT2444	0.22	-0.1
3,061,676	+		BT2444	0.24	-1.2
3,061,700	-		BT2444	0.25	-0.5
3,061,728	-		BT2444	0.28	-2.3
3,061,728	-		BT2444	0.28	-2.3
3,061,733	+		BT2444	0.28	-0.1
3,061,734	-		BT2444	0.28	-1.1
3,061,834	+		BT2444	0.36	+1.8
3,061,834	+		BT2444	0.36	+1.5
3,061,878	+		BT2444	0.39	-1.1
3,061,878	+		BT2444	0.39	-0.1
3,061,879	-		BT2444	0.39	-2.7
3,061,879	-		BT2444	0.39	-1.3
3,061,879	-		BT2444	0.39	-0.4
3,061,951	-		BT2444	0.44	-0.9
3,061,972	+		BT2444	0.46	-0.3
3,061,973	-		BT2444	0.46	+2.1
3,061,973	-		BT2444	0.46	-2.0
3,061,975	+		BT2444	0.46	-1.2
3,061,976	-		BT2444	0.46	-0.9
3,061,977	+		BT2444	0.46	-1.9
3,061,993	+		BT2444	0.48	-2.0