Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2439

Experiment: Post-colonization (Day 6) - Cage6;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 6) - Cage6;Mouse2
3,052,473	-		BT2437	0.66	-1.6
3,052,493	+		BT2437	0.69	-0.9
3,052,494	-		BT2437	0.69	-3.6
3,052,499	+		BT2437	0.70	-1.6
3,052,500	-		BT2437	0.70	+0.4
3,052,500	-		BT2437	0.70	-2.9
3,052,501	+		BT2437	0.70	-2.3
3,052,502	-		BT2437	0.70	-2.3
3,052,502	-		BT2437	0.70	-0.1
3,052,519	+		BT2437	0.73	-1.9
3,052,587	-		BT2437	0.84	-1.6
3,052,613	-		BT2437	0.88	+0.4
3,052,618	+		BT2437	0.88	-0.6
3,052,673	+				-1.9
3,052,679	-				-4.5
3,052,723	+				-1.4
3,052,805	+		BT2438	0.16	-2.3
3,052,810	+		BT2438	0.17	-2.4
3,052,810	+		BT2438	0.17	-2.6
3,052,810	+		BT2438	0.17	-2.7
3,052,811	-		BT2438	0.17	-2.7
3,052,811	-		BT2438	0.17	-2.1
3,052,811	-		BT2438	0.17	-2.4
3,052,815	+		BT2438	0.17	-1.6
3,052,816	-		BT2438	0.18	-3.1
3,052,937	+		BT2438	0.37	-2.4
3,052,955	+		BT2438	0.40	-2.9
3,052,956	-		BT2438	0.40	-0.1
3,052,980	+		BT2438	0.44	-2.4
3,052,996	+		BT2438	0.46	-2.6
3,052,997	-		BT2438	0.46	-0.6
3,053,084	+		BT2438	0.60	+0.4
3,053,084	+		BT2438	0.60	-1.4
3,053,085	-		BT2438	0.60	-3.1
3,053,111	+		BT2438	0.65	-3.9
3,053,112	-		BT2438	0.65	-0.0
3,053,112	-		BT2438	0.65	-2.4
3,053,116	+		BT2438	0.65	-1.4
3,053,187	+		BT2438	0.77	+0.4
3,053,187	+		BT2438	0.77	-1.9
3,053,188	-		BT2438	0.77	-0.9
3,053,244	-		BT2438	0.86	-2.8
3,053,249	+		BT2438	0.87	-2.0
3,053,249	+		BT2438	0.87	-0.1
3,053,249	+		BT2438	0.87	-4.0
3,053,255	-		BT2438	0.88	-5.4
3,053,255	-		BT2438	0.88	-0.1
3,053,260	+		BT2438	0.88	-2.0
3,053,272	-				-2.6
3,053,279	+				-2.6
3,053,279	+				-4.4
3,053,280	-				-2.4
3,053,287	-				-1.6
3,053,287	-				-0.9
3,053,362	-				-1.9
3,053,426	+				-2.0
3,053,441	-				-0.1
3,053,468	-				-1.3
3,053,483	-				-1.4
3,053,513	-				-0.8
3,053,539	+				-0.2
3,053,576	+				-2.1
3,053,579	-				-1.8
3,053,593	-				-0.5
3,053,708	-		BT2439	0.10	-1.6
3,053,711	+		BT2439	0.10	-1.6
3,053,711	+		BT2439	0.10	-3.6
3,053,712	-		BT2439	0.10	+1.3
3,053,712	-		BT2439	0.10	-1.4
3,053,859	+		BT2439	0.15	-2.6
3,053,925	-		BT2439	0.17	-0.4
3,053,925	-		BT2439	0.17	-0.3
3,053,925	-		BT2439	0.17	-0.4
3,053,931	+		BT2439	0.18	-1.8
3,053,931	+		BT2439	0.18	+0.7
3,053,972	+		BT2439	0.19	-2.1
3,053,973	-		BT2439	0.19	+1.7
3,054,124	-		BT2439	0.24	+0.1
3,054,144	-		BT2439	0.25	-1.7
3,054,171	-		BT2439	0.26	+0.5
3,054,171	-		BT2439	0.26	-0.1
3,054,270	-		BT2439	0.29	+0.2
3,054,273	+		BT2439	0.29	-1.4
3,054,278	-		BT2439	0.29	-2.0
3,054,369	+		BT2439	0.32	-2.5
3,054,389	+		BT2439	0.33	+0.6
3,054,432	-		BT2439	0.34	+0.3
3,054,463	-		BT2439	0.35	-1.1
3,054,488	+		BT2439	0.36	-1.2
3,054,488	+		BT2439	0.36	+0.3
3,054,489	-		BT2439	0.36	-1.1
3,054,489	-		BT2439	0.36	+1.0
3,054,489	-		BT2439	0.36	-0.4
3,054,596	+		BT2439	0.40	-0.9
3,054,611	-		BT2439	0.40	+0.5
3,054,611	-		BT2439	0.40	-0.6
3,054,882	+		BT2439	0.49	-0.6
3,054,902	+		BT2439	0.50	-1.5
3,054,902	+		BT2439	0.50	+0.3
3,054,903	-		BT2439	0.50	+1.3
3,054,947	+		BT2439	0.51	-2.8
3,054,993	-		BT2439	0.53	-0.1
3,054,993	-		BT2439	0.53	-0.6
3,055,183	-		BT2439	0.59	-0.5
3,055,242	+		BT2439	0.61	+0.1
3,055,243	-		BT2439	0.61	-1.1
3,055,305	-		BT2439	0.63	-1.9
3,055,305	-		BT2439	0.63	-2.0
3,055,308	+				+0.5
3,055,308	+		BT2439	0.63	+1.4
3,055,308	+		BT2439	0.63	-2.8
3,055,310	+		BT2439	0.63	-1.1
3,055,341	+		BT2439	0.64	+0.2
3,055,391	-		BT2439	0.66	+1.5
3,055,420	+		BT2439	0.67	-0.5
3,055,551	+		BT2439	0.71	+1.1
3,055,552	-		BT2439	0.71	-2.2
3,055,552	-		BT2439	0.71	+1.7
3,055,623	+		BT2439	0.74	-0.8
3,055,653	+		BT2439	0.75	+1.2
3,055,727	-		BT2439	0.77	-1.8
3,055,727	-		BT2439	0.77	-2.1
3,055,769	-		BT2439	0.79	-1.6
3,055,771	+		BT2439	0.79	+0.6
3,055,804	+		BT2439	0.80	+1.0
3,055,808	-		BT2439	0.80	-0.8
3,055,808	-		BT2439	0.80	-0.1
3,055,852	-		BT2439	0.81	-2.0
3,055,870	-		BT2439	0.82	+0.3
3,055,879	-		BT2439	0.82	-0.7
3,055,912	+		BT2439	0.83	+0.7
3,055,919	-		BT2439	0.84	-1.4
3,055,924	+		BT2439	0.84	-0.8
3,055,924	+		BT2439	0.84	+0.8
3,055,953	-		BT2439	0.85	-1.2
3,055,953	-		BT2439	0.85	-0.6
3,055,964	-		BT2439	0.85	-0.9
3,055,964	-		BT2439	0.85	-1.4
3,055,964	-		BT2439	0.85	+0.2
3,055,972	-		BT2439	0.85	+0.6
3,055,981	-		BT2439	0.86	-0.7
3,055,995	+		BT2439	0.86	+0.5
3,056,154	+				-1.5
3,056,157	-				-0.0
3,056,157	-				-0.1
3,056,182	+				-1.5
3,056,221	+				-1.1
3,056,222	-				+0.7
3,056,224	-				-0.1
3,056,224	-				+0.3
3,056,259	+				+1.3
3,056,265	+				-0.5
3,056,304	+				-0.5
3,056,310	+				-1.1
3,056,313	-				+0.6
3,056,313	-				-2.8
3,056,337	+				-1.8
3,056,337	+				-0.5
3,056,337	+				-3.3
3,056,374	+				-1.4
3,056,389	+				-0.3
3,056,390	-				-2.0
3,056,390	-				+0.9
3,056,391	+				-0.5
3,056,391	+				+0.7
3,056,392	-				-0.0
3,056,392	-				-2.7
3,056,393	+				-1.7
3,056,393	+				-0.5
3,056,393	+				-0.4
3,056,394	-				-2.0
3,056,398	+				-2.7
3,056,401	+				-0.1
3,056,402	-				-2.8
3,056,430	+				-0.1
3,056,547	-		BT2440	0.16	-1.2
3,056,559	-		BT2440	0.17	+0.2
3,056,572	-		BT2440	0.19	-1.7
3,056,613	+		BT2440	0.23	-2.0
3,056,613	+		BT2440	0.23	-3.0
3,056,613	+		BT2440	0.23	+0.3
3,056,613	+		BT2440	0.23	-0.9
3,056,614	-		BT2440	0.23	-0.4
3,056,614	-		BT2440	0.23	-1.2
3,056,683	+		BT2440	0.31	+0.5
3,056,683	+		BT2440	0.31	-1.0
3,056,782	+		BT2440	0.42	+0.5
3,056,824	+		BT2440	0.47	-1.4
3,056,835	+		BT2440	0.48	-1.4
3,056,835	+		BT2440	0.48	-1.2
3,056,835	+		BT2440	0.48	-0.1
3,056,835	+		BT2440	0.48	+1.2
3,056,836	-		BT2440	0.48	-1.8
3,056,836	-		BT2440	0.48	+0.6
3,056,924	-		BT2440	0.58	-0.4
3,056,952	+		BT2440	0.61	-0.8
3,056,963	+		BT2440	0.63	-0.8
3,056,972	+		BT2440	0.64	-1.7
3,056,972	+		BT2440	0.64	-2.5
3,056,973	-		BT2440	0.64	+1.6
3,056,977	+		BT2440	0.64	-0.0
3,056,997	-		BT2440	0.67	-1.5
3,057,129	+		BT2440	0.81	-1.7
3,057,130	-		BT2440	0.82	-1.1
3,057,189	+		BT2440	0.88	-0.9
3,057,192	+		BT2440	0.89	-1.4
3,057,237	+				+1.5
3,057,238	-				+0.9
3,057,257	+				+0.5
3,057,264	-				+1.1
3,057,264	-				-0.1
3,057,264	-				-0.5
3,057,276	-				-1.3
3,057,281	-				-0.5
3,057,307	+				-2.1
3,057,307	+				-0.7
3,057,308	-				-0.8
3,057,312	-				+0.5
3,057,362	-				-2.1
3,057,362	-				+1.5