Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18790 and BPHYT_RS18795 are separated by 2 nucleotides BPHYT_RS18795 and BPHYT_RS18800 are separated by 70 nucleotides BPHYT_RS18800 and BPHYT_RS18805 are separated by 485 nucleotides
BPHYT_RS18790: BPHYT_RS18790 - ATP synthase, at 4,224,556 to 4,226,205
_RS18790
BPHYT_RS18795: BPHYT_RS18795 - flagellar export protein FliJ, at 4,226,208 to 4,226,657
_RS18795
BPHYT_RS18800: BPHYT_RS18800 - flagellar hook-length control protein, at 4,226,728 to 4,228,221
_RS18800
BPHYT_RS18805: BPHYT_RS18805 - flagellar basal body protein FliL, at 4,228,707 to 4,229,207
_RS18805
Position (kb) 4226
4227
4228
4229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4225.807 kb on + strand, within BPHYT_RS18790 at 4225.808 kb on - strand, within BPHYT_RS18790 at 4225.808 kb on - strand, within BPHYT_RS18790 at 4225.808 kb on - strand, within BPHYT_RS18790 at 4225.809 kb on + strand, within BPHYT_RS18790 at 4225.809 kb on + strand, within BPHYT_RS18790 at 4225.810 kb on - strand, within BPHYT_RS18790 at 4225.810 kb on - strand, within BPHYT_RS18790 at 4225.918 kb on + strand, within BPHYT_RS18790 at 4225.998 kb on + strand, within BPHYT_RS18790 at 4225.998 kb on + strand, within BPHYT_RS18790 at 4225.999 kb on - strand, within BPHYT_RS18790 at 4225.999 kb on - strand, within BPHYT_RS18790 at 4226.352 kb on + strand, within BPHYT_RS18795 at 4226.353 kb on - strand, within BPHYT_RS18795 at 4226.539 kb on - strand, within BPHYT_RS18795 at 4226.727 kb on + strand at 4226.728 kb on - strand at 4227.105 kb on + strand, within BPHYT_RS18800 at 4227.106 kb on - strand, within BPHYT_RS18800 at 4227.362 kb on + strand, within BPHYT_RS18800 at 4227.362 kb on + strand, within BPHYT_RS18800 at 4227.362 kb on + strand, within BPHYT_RS18800 at 4227.366 kb on + strand, within BPHYT_RS18800 at 4227.367 kb on - strand, within BPHYT_RS18800 at 4227.448 kb on - strand, within BPHYT_RS18800 at 4227.774 kb on + strand, within BPHYT_RS18800 at 4227.775 kb on - strand, within BPHYT_RS18800 at 4227.775 kb on - strand, within BPHYT_RS18800 at 4227.899 kb on + strand, within BPHYT_RS18800 at 4227.900 kb on - strand, within BPHYT_RS18800 at 4228.178 kb on + strand at 4228.179 kb on - strand at 4228.294 kb on + strand at 4228.499 kb on - strand at 4228.499 kb on - strand at 4228.524 kb on + strand at 4228.555 kb on + strand at 4228.555 kb on + strand at 4228.612 kb on + strand at 4228.684 kb on + strand at 4228.793 kb on + strand, within BPHYT_RS18805 at 4228.979 kb on - strand, within BPHYT_RS18805 at 4228.979 kb on - strand, within BPHYT_RS18805 at 4229.032 kb on + strand, within BPHYT_RS18805 at 4229.032 kb on + strand, within BPHYT_RS18805 at 4229.033 kb on - strand, within BPHYT_RS18805
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,225,807 + BPHYT_RS18790 0.76 -2.7 4,225,808 - BPHYT_RS18790 0.76 -2.2 4,225,808 - BPHYT_RS18790 0.76 -2.1 4,225,808 - BPHYT_RS18790 0.76 -0.8 4,225,809 + BPHYT_RS18790 0.76 +0.2 4,225,809 + BPHYT_RS18790 0.76 -0.6 4,225,810 - BPHYT_RS18790 0.76 -2.7 4,225,810 - BPHYT_RS18790 0.76 +0.1 4,225,918 + BPHYT_RS18790 0.83 -2.5 4,225,998 + BPHYT_RS18790 0.87 -2.4 4,225,998 + BPHYT_RS18790 0.87 -2.0 4,225,999 - BPHYT_RS18790 0.87 -0.4 4,225,999 - BPHYT_RS18790 0.87 -2.0 4,226,352 + BPHYT_RS18795 0.32 -1.6 4,226,353 - BPHYT_RS18795 0.32 -3.8 4,226,539 - BPHYT_RS18795 0.74 -1.0 4,226,727 + +0.2 4,226,728 - -1.7 4,227,105 + BPHYT_RS18800 0.25 -3.3 4,227,106 - BPHYT_RS18800 0.25 -1.3 4,227,362 + BPHYT_RS18800 0.42 -0.5 4,227,362 + BPHYT_RS18800 0.42 -0.9 4,227,362 + BPHYT_RS18800 0.42 -2.2 4,227,366 + BPHYT_RS18800 0.43 -2.6 4,227,367 - BPHYT_RS18800 0.43 -1.1 4,227,448 - BPHYT_RS18800 0.48 -1.2 4,227,774 + BPHYT_RS18800 0.70 -3.0 4,227,775 - BPHYT_RS18800 0.70 -1.7 4,227,775 - BPHYT_RS18800 0.70 -2.9 4,227,899 + BPHYT_RS18800 0.78 -3.7 4,227,900 - BPHYT_RS18800 0.78 -0.2 4,228,178 + -2.5 4,228,179 - -0.7 4,228,294 + -1.7 4,228,499 - -1.1 4,228,499 - -1.4 4,228,524 + +0.9 4,228,555 + -2.1 4,228,555 + +0.3 4,228,612 + -0.3 4,228,684 + -1.0 4,228,793 + BPHYT_RS18805 0.17 -3.6 4,228,979 - BPHYT_RS18805 0.54 -1.6 4,228,979 - BPHYT_RS18805 0.54 -1.3 4,229,032 + BPHYT_RS18805 0.65 -1.2 4,229,032 + BPHYT_RS18805 0.65 -1.0 4,229,033 - BPHYT_RS18805 0.65 -1.5
Or see this region's nucleotide sequence