Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11595

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11585 and BPHYT_RS11590 are separated by 261 nucleotidesBPHYT_RS11590 and BPHYT_RS11595 are separated by 43 nucleotidesBPHYT_RS11595 and BPHYT_RS11600 are separated by 329 nucleotides BPHYT_RS11585: BPHYT_RS11585 - hypothetical protein, at 2,633,057 to 2,633,458 _RS11585 BPHYT_RS11590: BPHYT_RS11590 - hypothetical protein, at 2,633,720 to 2,633,965 _RS11590 BPHYT_RS11595: BPHYT_RS11595 - phosphoesterase, at 2,634,009 to 2,634,614 _RS11595 BPHYT_RS11600: BPHYT_RS11600 - biotin synthase, at 2,634,944 to 2,636,152 _RS11600 Position (kb) 2634 2635Strain fitness (log2 ratio) -1 0 1 2at 2633.492 kb on - strandat 2633.540 kb on - strandat 2633.964 kb on - strandat 2634.172 kb on + strand, within BPHYT_RS11595at 2634.845 kb on - strandat 2634.909 kb on - strandat 2634.927 kb on - strandat 2635.145 kb on + strand, within BPHYT_RS11600at 2635.158 kb on - strand, within BPHYT_RS11600at 2635.251 kb on - strand, within BPHYT_RS11600

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,633,492 - +0.1
2,633,540 - +2.4
2,633,964 - -1.3
2,634,172 + BPHYT_RS11595 0.27 +1.2
2,634,845 - +0.7
2,634,909 - -0.3
2,634,927 - -0.3
2,635,145 + BPHYT_RS11600 0.17 +0.1
2,635,158 - BPHYT_RS11600 0.18 +0.2
2,635,251 - BPHYT_RS11600 0.25 -1.2

Or see this region's nucleotide sequence