Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0251

Experiment: Post-colonization (Day 6) - Cage5;Mouse1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0250 and BT0251 overlap by 4 nucleotidesBT0251 and BT0252 are separated by 244 nucleotides BT0250: BT0250 - dihydroorotase (DHOase) (NCBI ptt file), at 275,479 to 276,816 BT0250 BT0251: BT0251 - dolichol-phosphate mannosyltransferase (NCBI ptt file), at 276,813 to 277,556 BT0251 BT0252: BT0252 - transcription-repair coupling factor (NCBI ptt file), at 277,801 to 281,184 BT0252 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 277.603 kb on - strandat 277.618 kb on - strandat 277.801 kb on - strandat 277.801 kb on - strandat 277.801 kb on - strandat 277.891 kb on - strandat 278.292 kb on - strand, within BT0252at 278.302 kb on + strand, within BT0252at 278.312 kb on - strand, within BT0252at 278.332 kb on + strand, within BT0252at 278.332 kb on + strand, within BT0252at 278.333 kb on - strand, within BT0252

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Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 6) - Cage5;Mouse1
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277,603 - -1.6
277,618 - -0.7
277,801 - -2.9
277,801 - +0.3
277,801 - -1.5
277,891 - -0.9
278,292 - BT0252 0.15 +2.0
278,302 + BT0252 0.15 -2.3
278,312 - BT0252 0.15 -2.2
278,332 + BT0252 0.16 +0.3
278,332 + BT0252 0.16 -0.6
278,333 - BT0252 0.16 -2.5

Or see this region's nucleotide sequence