Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23585

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23580 and BPHYT_RS23585 are separated by 84 nucleotidesBPHYT_RS23585 and BPHYT_RS23590 are separated by 18 nucleotides BPHYT_RS23580: BPHYT_RS23580 - hypothetical protein, at 862,660 to 863,697 _RS23580 BPHYT_RS23585: BPHYT_RS23585 - chemotaxis protein CheY, at 863,782 to 866,340 _RS23585 BPHYT_RS23590: BPHYT_RS23590 - hypothetical protein, at 866,359 to 867,585 _RS23590 Position (kb) 863 864 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 862.784 kb on - strand, within BPHYT_RS23580at 862.954 kb on - strand, within BPHYT_RS23580at 863.072 kb on - strand, within BPHYT_RS23580at 863.149 kb on + strand, within BPHYT_RS23580at 863.151 kb on + strand, within BPHYT_RS23580at 863.152 kb on - strand, within BPHYT_RS23580at 863.198 kb on + strand, within BPHYT_RS23580at 863.254 kb on + strand, within BPHYT_RS23580at 863.254 kb on + strand, within BPHYT_RS23580at 863.421 kb on + strand, within BPHYT_RS23580at 863.446 kb on + strand, within BPHYT_RS23580at 863.446 kb on + strand, within BPHYT_RS23580at 863.447 kb on - strand, within BPHYT_RS23580at 863.447 kb on - strand, within BPHYT_RS23580at 863.825 kb on + strandat 864.184 kb on + strand, within BPHYT_RS23585at 864.423 kb on + strand, within BPHYT_RS23585at 864.424 kb on - strand, within BPHYT_RS23585at 864.424 kb on - strand, within BPHYT_RS23585at 864.531 kb on - strand, within BPHYT_RS23585at 864.750 kb on + strand, within BPHYT_RS23585at 864.752 kb on + strand, within BPHYT_RS23585at 865.389 kb on + strand, within BPHYT_RS23585at 865.494 kb on + strand, within BPHYT_RS23585at 865.494 kb on + strand, within BPHYT_RS23585at 865.495 kb on - strand, within BPHYT_RS23585at 865.495 kb on - strand, within BPHYT_RS23585at 865.495 kb on - strand, within BPHYT_RS23585at 865.495 kb on - strand, within BPHYT_RS23585at 865.599 kb on - strand, within BPHYT_RS23585at 865.601 kb on - strand, within BPHYT_RS23585at 865.812 kb on + strand, within BPHYT_RS23585at 866.087 kb on + strandat 866.108 kb on + strandat 866.108 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.236 kb on + strandat 866.236 kb on + strandat 866.240 kb on + strandat 866.241 kb on - strandat 866.244 kb on - strandat 866.335 kb on + strandat 866.360 kb on + strandat 866.360 kb on + strandat 866.361 kb on - strandat 866.569 kb on - strand, within BPHYT_RS23590at 866.570 kb on + strand, within BPHYT_RS23590at 866.571 kb on - strand, within BPHYT_RS23590at 866.646 kb on + strand, within BPHYT_RS23590at 866.647 kb on - strand, within BPHYT_RS23590at 866.647 kb on - strand, within BPHYT_RS23590at 866.648 kb on + strand, within BPHYT_RS23590at 866.648 kb on + strand, within BPHYT_RS23590at 866.649 kb on - strand, within BPHYT_RS23590at 866.655 kb on + strand, within BPHYT_RS23590at 866.656 kb on - strand, within BPHYT_RS23590at 866.656 kb on - strand, within BPHYT_RS23590at 866.656 kb on - strand, within BPHYT_RS23590at 866.656 kb on - strand, within BPHYT_RS23590at 866.955 kb on - strand, within BPHYT_RS23590at 866.995 kb on + strand, within BPHYT_RS23590at 867.131 kb on + strand, within BPHYT_RS23590at 867.132 kb on - strand, within BPHYT_RS23590at 867.143 kb on + strand, within BPHYT_RS23590at 867.285 kb on + strand, within BPHYT_RS23590

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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862,784 - BPHYT_RS23580 0.12 +2.1
862,954 - BPHYT_RS23580 0.28 -0.3
863,072 - BPHYT_RS23580 0.40 -0.1
863,149 + BPHYT_RS23580 0.47 +0.7
863,151 + BPHYT_RS23580 0.47 -0.2
863,152 - BPHYT_RS23580 0.47 -0.2
863,198 + BPHYT_RS23580 0.52 -2.0
863,254 + BPHYT_RS23580 0.57 -0.0
863,254 + BPHYT_RS23580 0.57 -2.9
863,421 + BPHYT_RS23580 0.73 -0.5
863,446 + BPHYT_RS23580 0.76 -0.5
863,446 + BPHYT_RS23580 0.76 -3.3
863,447 - BPHYT_RS23580 0.76 -0.4
863,447 - BPHYT_RS23580 0.76 -2.2
863,825 + +0.5
864,184 + BPHYT_RS23585 0.16 +0.2
864,423 + BPHYT_RS23585 0.25 +0.4
864,424 - BPHYT_RS23585 0.25 -0.1
864,424 - BPHYT_RS23585 0.25 +0.9
864,531 - BPHYT_RS23585 0.29 +0.3
864,750 + BPHYT_RS23585 0.38 -0.7
864,752 + BPHYT_RS23585 0.38 +0.9
865,389 + BPHYT_RS23585 0.63 +0.1
865,494 + BPHYT_RS23585 0.67 +2.0
865,494 + BPHYT_RS23585 0.67 +0.0
865,495 - BPHYT_RS23585 0.67 -0.3
865,495 - BPHYT_RS23585 0.67 +0.7
865,495 - BPHYT_RS23585 0.67 -0.7
865,495 - BPHYT_RS23585 0.67 +0.5
865,599 - BPHYT_RS23585 0.71 +1.3
865,601 - BPHYT_RS23585 0.71 +2.9
865,812 + BPHYT_RS23585 0.79 +1.1
866,087 + -0.7
866,108 + -0.5
866,108 + +0.4
866,225 + +1.2
866,225 + -1.2
866,236 + -2.4
866,236 + +0.4
866,240 + +0.6
866,241 - -1.2
866,244 - +1.1
866,335 + +0.9
866,360 + -0.3
866,360 + +0.7
866,361 - -2.8
866,569 - BPHYT_RS23590 0.17 -0.2
866,570 + BPHYT_RS23590 0.17 +1.9
866,571 - BPHYT_RS23590 0.17 -1.4
866,646 + BPHYT_RS23590 0.23 +0.6
866,647 - BPHYT_RS23590 0.23 -0.5
866,647 - BPHYT_RS23590 0.23 -0.0
866,648 + BPHYT_RS23590 0.24 -0.2
866,648 + BPHYT_RS23590 0.24 -1.6
866,649 - BPHYT_RS23590 0.24 -1.1
866,655 + BPHYT_RS23590 0.24 -0.1
866,656 - BPHYT_RS23590 0.24 -0.6
866,656 - BPHYT_RS23590 0.24 -0.6
866,656 - BPHYT_RS23590 0.24 -0.0
866,656 - BPHYT_RS23590 0.24 +0.2
866,955 - BPHYT_RS23590 0.49 +0.7
866,995 + BPHYT_RS23590 0.52 -1.7
867,131 + BPHYT_RS23590 0.63 +0.1
867,132 - BPHYT_RS23590 0.63 -0.1
867,143 + BPHYT_RS23590 0.64 -0.0
867,285 + BPHYT_RS23590 0.75 -1.4

Or see this region's nucleotide sequence