Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02980

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02975 and BPHYT_RS02980 are separated by 135 nucleotidesBPHYT_RS02980 and BPHYT_RS02985 are separated by 296 nucleotidesBPHYT_RS02985 and BPHYT_RS02990 are separated by 202 nucleotides BPHYT_RS02975: BPHYT_RS02975 - membrane protein, at 662,958 to 664,115 _RS02975 BPHYT_RS02980: BPHYT_RS02980 - single-stranded DNA-binding protein, at 664,251 to 664,790 _RS02980 BPHYT_RS02985: BPHYT_RS02985 - MaoC family dehydratase, at 665,087 to 665,587 _RS02985 BPHYT_RS02990: BPHYT_RS02990 - MFS transporter, at 665,790 to 667,175 _RS02990 Position (kb) 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 663.619 kb on + strand, within BPHYT_RS02975at 663.620 kb on - strand, within BPHYT_RS02975at 663.684 kb on + strand, within BPHYT_RS02975at 663.954 kb on + strand, within BPHYT_RS02975at 664.074 kb on - strandat 664.074 kb on - strandat 664.075 kb on + strandat 664.947 kb on + strandat 665.019 kb on + strandat 665.168 kb on + strand, within BPHYT_RS02985at 665.169 kb on - strand, within BPHYT_RS02985at 665.194 kb on + strand, within BPHYT_RS02985at 665.541 kb on + strandat 665.542 kb on - strandat 665.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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663,619 + BPHYT_RS02975 0.57 -2.2
663,620 - BPHYT_RS02975 0.57 +1.0
663,684 + BPHYT_RS02975 0.63 -1.4
663,954 + BPHYT_RS02975 0.86 -0.6
664,074 - -0.6
664,074 - +2.6
664,075 + +0.3
664,947 + +0.5
665,019 + -0.5
665,168 + BPHYT_RS02985 0.16 -0.1
665,169 - BPHYT_RS02985 0.16 -0.8
665,194 + BPHYT_RS02985 0.21 +1.1
665,541 + +0.2
665,542 - -0.4
665,545 + -0.6

Or see this region's nucleotide sequence