Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10285

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10280 and BPHYT_RS10285 are separated by 120 nucleotidesBPHYT_RS10285 and BPHYT_RS10290 are separated by 435 nucleotides BPHYT_RS10280: BPHYT_RS10280 - ornithine cyclodeaminase, at 2,336,286 to 2,337,254 _RS10280 BPHYT_RS10285: BPHYT_RS10285 - hypothetical protein, at 2,337,375 to 2,338,019 _RS10285 BPHYT_RS10290: BPHYT_RS10290 - Fis family transcriptional regulator, at 2,338,455 to 2,340,773 _RS10290 Position (kb) 2337 2338 2339Strain fitness (log2 ratio) -1 0 1 2at 2336.466 kb on - strand, within BPHYT_RS10280at 2336.469 kb on + strand, within BPHYT_RS10280at 2336.469 kb on + strand, within BPHYT_RS10280at 2336.619 kb on - strand, within BPHYT_RS10280at 2336.894 kb on + strand, within BPHYT_RS10280at 2336.894 kb on + strand, within BPHYT_RS10280at 2337.423 kb on + strandat 2337.511 kb on - strand, within BPHYT_RS10285at 2337.981 kb on + strandat 2337.982 kb on - strandat 2338.139 kb on - strandat 2338.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,336,466 - BPHYT_RS10280 0.19 +2.6
2,336,469 + BPHYT_RS10280 0.19 +0.4
2,336,469 + BPHYT_RS10280 0.19 -0.0
2,336,619 - BPHYT_RS10280 0.34 +1.7
2,336,894 + BPHYT_RS10280 0.63 +1.4
2,336,894 + BPHYT_RS10280 0.63 -0.3
2,337,423 + +2.3
2,337,511 - BPHYT_RS10285 0.21 +2.1
2,337,981 + +2.3
2,337,982 - +2.3
2,338,139 - -0.8
2,338,307 - +0.2

Or see this region's nucleotide sequence