Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00860

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00855 and BPHYT_RS00860 are separated by 833 nucleotides BPHYT_RS00855: BPHYT_RS00855 - hypothetical protein, at 193,560 to 193,820 _RS00855 BPHYT_RS00860: BPHYT_RS00860 - 3-ketoacyl-ACP reductase, at 194,654 to 195,394 _RS00860 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 193.673 kb on + strand, within BPHYT_RS00855at 194.016 kb on - strandat 194.103 kb on - strandat 194.127 kb on + strandat 194.206 kb on - strandat 194.348 kb on - strandat 194.399 kb on + strandat 194.400 kb on - strandat 194.662 kb on + strandat 194.662 kb on + strandat 194.797 kb on + strand, within BPHYT_RS00860at 194.797 kb on + strand, within BPHYT_RS00860at 194.801 kb on + strand, within BPHYT_RS00860at 194.802 kb on - strand, within BPHYT_RS00860at 194.802 kb on - strand, within BPHYT_RS00860at 194.822 kb on + strand, within BPHYT_RS00860at 194.823 kb on - strand, within BPHYT_RS00860at 194.841 kb on + strand, within BPHYT_RS00860at 194.937 kb on + strand, within BPHYT_RS00860at 195.375 kb on + strandat 195.382 kb on + strandat 195.394 kb on + strandat 195.452 kb on + strandat 195.452 kb on + strandat 195.453 kb on - strandat 195.518 kb on + strandat 195.519 kb on - strandat 195.524 kb on + strandat 196.072 kb on + strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.073 kb on - strandat 196.142 kb on - strandat 196.203 kb on - strandat 196.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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193,673 + BPHYT_RS00855 0.43 -0.5
194,016 - +2.4
194,103 - +0.1
194,127 + -0.8
194,206 - +0.4
194,348 - +0.4
194,399 + +0.0
194,400 - +1.5
194,662 + -0.3
194,662 + +0.0
194,797 + BPHYT_RS00860 0.19 +1.2
194,797 + BPHYT_RS00860 0.19 +3.6
194,801 + BPHYT_RS00860 0.20 +1.6
194,802 - BPHYT_RS00860 0.20 +3.3
194,802 - BPHYT_RS00860 0.20 -3.5
194,822 + BPHYT_RS00860 0.23 +0.3
194,823 - BPHYT_RS00860 0.23 -1.2
194,841 + BPHYT_RS00860 0.25 +0.4
194,937 + BPHYT_RS00860 0.38 +0.0
195,375 + +0.1
195,382 + -2.5
195,394 + -3.0
195,452 + +0.3
195,452 + +0.6
195,453 - -0.4
195,518 + -0.2
195,519 - +0.8
195,524 + -0.2
196,072 + +1.3
196,073 - +0.6
196,073 - +0.1
196,073 - +0.1
196,073 - -0.7
196,142 - -2.6
196,203 - -0.8
196,240 - -0.4

Or see this region's nucleotide sequence