Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02135

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS02130 and BPHYT_RS02135 are separated by 60 nucleotidesBPHYT_RS02135 and BPHYT_RS02140 are separated by 347 nucleotides BPHYT_RS02130: BPHYT_RS02130 - hydroxymethylglutaryl-CoA lyase, at 488,141 to 489,067 _RS02130 BPHYT_RS02135: BPHYT_RS02135 - glyoxylate reductase, at 489,128 to 490,069 _RS02135 BPHYT_RS02140: BPHYT_RS02140 - alpha/beta hydrolase, at 490,417 to 491,019 _RS02140 Position (kb) 489 490 491Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 488.299 kb on - strand, within BPHYT_RS02130at 488.299 kb on - strand, within BPHYT_RS02130at 489.079 kb on + strandat 489.080 kb on - strandat 489.124 kb on - strandat 489.405 kb on + strand, within BPHYT_RS02135at 489.405 kb on + strand, within BPHYT_RS02135at 489.763 kb on - strand, within BPHYT_RS02135at 489.818 kb on - strand, within BPHYT_RS02135at 490.183 kb on + strandat 490.184 kb on - strandat 490.184 kb on - strandat 490.189 kb on + strandat 490.574 kb on + strand, within BPHYT_RS02140at 490.575 kb on - strand, within BPHYT_RS02140at 490.638 kb on + strand, within BPHYT_RS02140at 490.638 kb on + strand, within BPHYT_RS02140at 490.639 kb on - strand, within BPHYT_RS02140at 490.639 kb on - strand, within BPHYT_RS02140at 490.663 kb on + strand, within BPHYT_RS02140at 490.664 kb on - strand, within BPHYT_RS02140at 490.685 kb on - strand, within BPHYT_RS02140at 490.890 kb on + strand, within BPHYT_RS02140at 490.891 kb on - strand, within BPHYT_RS02140at 491.000 kb on + strandat 491.000 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
488,299 - BPHYT_RS02130 0.17 -3.0
488,299 - BPHYT_RS02130 0.17 -4.2
489,079 + +0.3
489,080 - -0.7
489,124 - +0.3
489,405 + BPHYT_RS02135 0.29 -2.1
489,405 + BPHYT_RS02135 0.29 -1.5
489,763 - BPHYT_RS02135 0.67 -0.5
489,818 - BPHYT_RS02135 0.73 +4.6
490,183 + +0.2
490,184 - -0.2
490,184 - -0.2
490,189 + +1.3
490,574 + BPHYT_RS02140 0.26 +0.3
490,575 - BPHYT_RS02140 0.26 -0.3
490,638 + BPHYT_RS02140 0.37 +2.8
490,638 + BPHYT_RS02140 0.37 -0.4
490,639 - BPHYT_RS02140 0.37 +0.2
490,639 - BPHYT_RS02140 0.37 +0.4
490,663 + BPHYT_RS02140 0.41 +0.5
490,664 - BPHYT_RS02140 0.41 +0.3
490,685 - BPHYT_RS02140 0.44 -0.2
490,890 + BPHYT_RS02140 0.78 +0.7
490,891 - BPHYT_RS02140 0.79 -0.4
491,000 + -1.2
491,000 + -0.3

Or see this region's nucleotide sequence