Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23525

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23520 and BPHYT_RS23525 are separated by 202 nucleotidesBPHYT_RS23525 and BPHYT_RS23530 are separated by 512 nucleotidesBPHYT_RS23530 and BPHYT_RS23535 are separated by 190 nucleotides BPHYT_RS23520: BPHYT_RS23520 - peroxidase, at 844,433 to 845,500 _RS23520 BPHYT_RS23525: BPHYT_RS23525 - hypothetical protein, at 845,703 to 846,050 _RS23525 BPHYT_RS23530: BPHYT_RS23530 - hypothetical protein, at 846,563 to 846,790 _RS23530 BPHYT_RS23535: BPHYT_RS23535 - ABC transporter substrate-binding protein, at 846,981 to 847,700 _RS23535 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1at 844.771 kb on - strand, within BPHYT_RS23520at 845.224 kb on - strand, within BPHYT_RS23520at 845.704 kb on + strandat 845.709 kb on + strandat 846.007 kb on - strand, within BPHYT_RS23525at 846.342 kb on + strandat 846.414 kb on + strandat 846.453 kb on - strandat 846.487 kb on + strandat 846.877 kb on + strandat 846.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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844,771 - BPHYT_RS23520 0.32 +0.1
845,224 - BPHYT_RS23520 0.74 +1.2
845,704 + +0.8
845,709 + +0.9
846,007 - BPHYT_RS23525 0.87 +1.3
846,342 + +0.0
846,414 + -0.2
846,453 - +0.3
846,487 + -3.3
846,877 + +0.5
846,882 - +0.7

Or see this region's nucleotide sequence