Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35860 and BPHYT_RS35865 are separated by 358 nucleotides BPHYT_RS35865 and BPHYT_RS35870 are separated by 72 nucleotides
BPHYT_RS35860: BPHYT_RS35860 - type II secretory pathway component PulF-like protein, at 6,650 to 7,768
_RS35860
BPHYT_RS35865: BPHYT_RS35865 - hypothetical protein, at 8,127 to 8,426
_RS35865
BPHYT_RS35870: BPHYT_RS35870 - hypothetical protein, at 8,499 to 9,779
_RS35870
Position (kb) 8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.265 kb on + strand, within BPHYT_RS35860 at 7.712 kb on + strand at 7.757 kb on + strand at 7.757 kb on + strand at 7.777 kb on - strand at 7.944 kb on + strand at 7.944 kb on + strand at 7.945 kb on - strand at 7.983 kb on - strand at 8.036 kb on + strand at 8.088 kb on - strand at 8.129 kb on + strand at 8.129 kb on + strand at 8.130 kb on - strand at 8.143 kb on - strand at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.248 kb on - strand, within BPHYT_RS35865 at 8.396 kb on + strand, within BPHYT_RS35865 at 8.397 kb on - strand at 8.498 kb on - strand at 8.535 kb on - strand at 8.543 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.618 kb on + strand at 8.618 kb on + strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.622 kb on + strand at 8.623 kb on - strand at 8.895 kb on + strand, within BPHYT_RS35870 at 8.896 kb on - strand, within BPHYT_RS35870 at 8.935 kb on - strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.994 kb on + strand, within BPHYT_RS35870 at 8.995 kb on - strand, within BPHYT_RS35870 at 8.995 kb on - strand, within BPHYT_RS35870 at 9.102 kb on + strand, within BPHYT_RS35870 at 9.102 kb on + strand, within BPHYT_RS35870 at 9.105 kb on + strand, within BPHYT_RS35870 at 9.106 kb on - strand, within BPHYT_RS35870 at 9.168 kb on - strand, within BPHYT_RS35870 at 9.330 kb on + strand, within BPHYT_RS35870 at 9.330 kb on + strand, within BPHYT_RS35870 at 9.331 kb on - strand, within BPHYT_RS35870 at 9.365 kb on + strand, within BPHYT_RS35870 at 9.365 kb on + strand, within BPHYT_RS35870 at 9.396 kb on + strand, within BPHYT_RS35870 at 9.396 kb on + strand, within BPHYT_RS35870 at 9.397 kb on - strand, within BPHYT_RS35870
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 7,149 + BPHYT_RS35860 0.45 +0.9 7,149 + BPHYT_RS35860 0.45 -2.1 7,149 + BPHYT_RS35860 0.45 -1.7 7,150 - BPHYT_RS35860 0.45 +2.7 7,150 - BPHYT_RS35860 0.45 -0.7 7,185 - BPHYT_RS35860 0.48 -0.7 7,185 - BPHYT_RS35860 0.48 +0.5 7,185 - BPHYT_RS35860 0.48 +0.4 7,265 + BPHYT_RS35860 0.55 -2.1 7,712 + -0.4 7,757 + +1.3 7,757 + -1.6 7,777 - +1.8 7,944 + -1.9 7,944 + +0.2 7,945 - -0.2 7,983 - -2.4 8,036 + -0.6 8,088 - -0.0 8,129 + +0.4 8,129 + -1.1 8,130 - +0.4 8,143 - +0.3 8,247 + BPHYT_RS35865 0.40 +0.0 8,247 + BPHYT_RS35865 0.40 -1.8 8,247 + BPHYT_RS35865 0.40 +0.5 8,248 - BPHYT_RS35865 0.40 -0.0 8,396 + BPHYT_RS35865 0.90 +1.1 8,397 - -0.7 8,498 - +1.3 8,535 - -0.2 8,543 + -0.0 8,616 + +0.3 8,616 + -0.1 8,616 + -0.3 8,618 + -1.0 8,618 + -1.3 8,619 - +1.3 8,619 - +0.8 8,619 - +0.1 8,619 - +0.8 8,619 - +0.9 8,619 - +0.1 8,619 - -0.8 8,622 + +1.7 8,623 - +0.3 8,895 + BPHYT_RS35870 0.31 +1.1 8,896 - BPHYT_RS35870 0.31 +1.1 8,935 - BPHYT_RS35870 0.34 +0.8 8,994 + BPHYT_RS35870 0.39 -1.2 8,994 + BPHYT_RS35870 0.39 -0.2 8,994 + BPHYT_RS35870 0.39 +1.1 8,995 - BPHYT_RS35870 0.39 -0.2 8,995 - BPHYT_RS35870 0.39 -0.5 9,102 + BPHYT_RS35870 0.47 +0.1 9,102 + BPHYT_RS35870 0.47 +0.5 9,105 + BPHYT_RS35870 0.47 +0.5 9,106 - BPHYT_RS35870 0.47 +1.4 9,168 - BPHYT_RS35870 0.52 +1.1 9,330 + BPHYT_RS35870 0.65 +0.2 9,330 + BPHYT_RS35870 0.65 +1.7 9,331 - BPHYT_RS35870 0.65 +1.0 9,365 + BPHYT_RS35870 0.68 +1.7 9,365 + BPHYT_RS35870 0.68 +2.6 9,396 + BPHYT_RS35870 0.70 -0.3 9,396 + BPHYT_RS35870 0.70 +1.3 9,397 - BPHYT_RS35870 0.70 -0.2
Or see this region's nucleotide sequence