Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28805

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28790 and BPHYT_RS28795 are separated by 160 nucleotidesBPHYT_RS28795 and BPHYT_RS28800 overlap by 4 nucleotidesBPHYT_RS28800 and BPHYT_RS28805 are separated by 3 nucleotidesBPHYT_RS28805 and BPHYT_RS28810 are separated by 204 nucleotidesBPHYT_RS28810 and BPHYT_RS28815 are separated by 17 nucleotides BPHYT_RS28790: BPHYT_RS28790 - membrane protein, at 2,012,220 to 2,012,867 _RS28790 BPHYT_RS28795: BPHYT_RS28795 - ATPase, at 2,013,028 to 2,013,525 _RS28795 BPHYT_RS28800: BPHYT_RS28800 - ArsR family transcriptional regulator, at 2,013,522 to 2,013,860 _RS28800 BPHYT_RS28805: BPHYT_RS28805 - glyoxalase, at 2,013,864 to 2,014,325 _RS28805 BPHYT_RS28810: BPHYT_RS28810 - MarR family transcriptional regulator, at 2,014,530 to 2,014,982 _RS28810 BPHYT_RS28815: BPHYT_RS28815 - hydrolase, at 2,015,000 to 2,015,563 _RS28815 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -1 0 1 2 3at 2014.160 kb on - strand, within BPHYT_RS28805at 2014.160 kb on - strand, within BPHYT_RS28805at 2014.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,014,160 - BPHYT_RS28805 0.64 +2.9
2,014,160 - BPHYT_RS28805 0.64 +1.9
2,014,448 + +1.4

Or see this region's nucleotide sequence