Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27700 and BPHYT_RS27705 are separated by 55 nucleotides BPHYT_RS27705 and BPHYT_RS27710 overlap by 4 nucleotides BPHYT_RS27710 and BPHYT_RS27715 are separated by 173 nucleotides BPHYT_RS27715 and BPHYT_RS27720 overlap by 2 nucleotides BPHYT_RS27720 and BPHYT_RS27725 are separated by 0 nucleotides
BPHYT_RS27700: BPHYT_RS27700 - universal stress protein A, at 1,780,718 to 1,781,554
_RS27700
BPHYT_RS27705: BPHYT_RS27705 - universal stress protein A, at 1,781,610 to 1,782,116
_RS27705
BPHYT_RS27710: BPHYT_RS27710 - universal stress protein A, at 1,782,113 to 1,782,943
_RS27710
BPHYT_RS27715: BPHYT_RS27715 - UspA domain-containing protein, at 1,783,117 to 1,783,593
_RS27715
BPHYT_RS27720: BPHYT_RS27720 - hypothetical protein, at 1,783,592 to 1,783,831
_RS27720
BPHYT_RS27725: BPHYT_RS27725 - hypothetical protein, at 1,783,832 to 1,784,050
_RS27725
Position (kb) 1782
1783 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1781.176 kb on + strand, within BPHYT_RS27700 at 1781.613 kb on + strand at 1781.614 kb on - strand at 1781.614 kb on - strand at 1781.614 kb on - strand at 1781.623 kb on + strand at 1781.703 kb on + strand, within BPHYT_RS27705 at 1781.703 kb on + strand, within BPHYT_RS27705 at 1781.746 kb on - strand, within BPHYT_RS27705 at 1781.772 kb on + strand, within BPHYT_RS27705 at 1782.158 kb on - strand at 1782.224 kb on + strand, within BPHYT_RS27710 at 1782.224 kb on + strand, within BPHYT_RS27710 at 1782.225 kb on - strand, within BPHYT_RS27710 at 1782.225 kb on - strand, within BPHYT_RS27710 at 1782.452 kb on + strand, within BPHYT_RS27710 at 1782.476 kb on + strand, within BPHYT_RS27710 at 1782.477 kb on - strand, within BPHYT_RS27710 at 1782.477 kb on - strand, within BPHYT_RS27710 at 1782.542 kb on + strand, within BPHYT_RS27710 at 1783.014 kb on - strand at 1783.417 kb on - strand, within BPHYT_RS27715 at 1783.679 kb on - strand, within BPHYT_RS27720 at 1783.943 kb on - strand, within BPHYT_RS27725
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,781,176 + BPHYT_RS27700 0.55 +0.4 1,781,613 + +0.4 1,781,614 - +0.8 1,781,614 - +0.7 1,781,614 - +0.5 1,781,623 + +0.1 1,781,703 + BPHYT_RS27705 0.18 +0.1 1,781,703 + BPHYT_RS27705 0.18 -0.1 1,781,746 - BPHYT_RS27705 0.27 +0.9 1,781,772 + BPHYT_RS27705 0.32 +0.3 1,782,158 - +1.1 1,782,224 + BPHYT_RS27710 0.13 -0.4 1,782,224 + BPHYT_RS27710 0.13 +4.6 1,782,225 - BPHYT_RS27710 0.13 -0.2 1,782,225 - BPHYT_RS27710 0.13 +0.6 1,782,452 + BPHYT_RS27710 0.41 +2.2 1,782,476 + BPHYT_RS27710 0.44 -0.9 1,782,477 - BPHYT_RS27710 0.44 +3.4 1,782,477 - BPHYT_RS27710 0.44 +0.2 1,782,542 + BPHYT_RS27710 0.52 +1.1 1,783,014 - +0.9 1,783,417 - BPHYT_RS27715 0.63 -0.6 1,783,679 - BPHYT_RS27720 0.36 +1.4 1,783,943 - BPHYT_RS27725 0.51 +1.1
Or see this region's nucleotide sequence