Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27105

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27100 and BPHYT_RS27105 are separated by 87 nucleotidesBPHYT_RS27105 and BPHYT_RS27110 are separated by 435 nucleotides BPHYT_RS27100: BPHYT_RS27100 - RNase II stability modulator, at 1,656,027 to 1,658,030 _RS27100 BPHYT_RS27105: BPHYT_RS27105 - enoyl-CoA hydratase, at 1,658,118 to 1,659,002 _RS27105 BPHYT_RS27110: BPHYT_RS27110 - dehydrogenase, at 1,659,438 to 1,660,541 _RS27110 Position (kb) 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1 2at 1657.119 kb on + strand, within BPHYT_RS27100at 1657.177 kb on - strand, within BPHYT_RS27100at 1657.177 kb on - strand, within BPHYT_RS27100at 1657.177 kb on - strand, within BPHYT_RS27100at 1657.248 kb on + strand, within BPHYT_RS27100at 1658.061 kb on + strandat 1658.061 kb on + strandat 1658.062 kb on - strandat 1658.364 kb on - strand, within BPHYT_RS27105at 1658.366 kb on - strand, within BPHYT_RS27105at 1658.366 kb on - strand, within BPHYT_RS27105at 1658.366 kb on - strand, within BPHYT_RS27105at 1658.427 kb on - strand, within BPHYT_RS27105at 1658.695 kb on + strand, within BPHYT_RS27105at 1658.696 kb on - strand, within BPHYT_RS27105at 1658.930 kb on - strandat 1658.932 kb on + strandat 1658.932 kb on + strandat 1658.991 kb on - strandat 1659.025 kb on - strandat 1659.041 kb on - strandat 1659.376 kb on - strandat 1659.439 kb on + strandat 1659.439 kb on + strandat 1659.440 kb on - strandat 1659.592 kb on + strand, within BPHYT_RS27110at 1659.592 kb on + strand, within BPHYT_RS27110at 1659.592 kb on + strand, within BPHYT_RS27110at 1659.593 kb on - strand, within BPHYT_RS27110at 1659.819 kb on - strand, within BPHYT_RS27110at 1659.937 kb on + strand, within BPHYT_RS27110

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,657,119 + BPHYT_RS27100 0.54 +1.4
1,657,177 - BPHYT_RS27100 0.57 -0.1
1,657,177 - BPHYT_RS27100 0.57 +2.0
1,657,177 - BPHYT_RS27100 0.57 +0.2
1,657,248 + BPHYT_RS27100 0.61 +1.0
1,658,061 + -0.3
1,658,061 + +0.5
1,658,062 - +0.0
1,658,364 - BPHYT_RS27105 0.28 -0.6
1,658,366 - BPHYT_RS27105 0.28 +0.3
1,658,366 - BPHYT_RS27105 0.28 +0.2
1,658,366 - BPHYT_RS27105 0.28 +1.3
1,658,427 - BPHYT_RS27105 0.35 -1.1
1,658,695 + BPHYT_RS27105 0.65 +1.2
1,658,696 - BPHYT_RS27105 0.65 -0.8
1,658,930 - +0.3
1,658,932 + +1.7
1,658,932 + -0.2
1,658,991 - -0.8
1,659,025 - +1.6
1,659,041 - -1.0
1,659,376 - -0.1
1,659,439 + +1.0
1,659,439 + -2.0
1,659,440 - -0.7
1,659,592 + BPHYT_RS27110 0.14 -0.3
1,659,592 + BPHYT_RS27110 0.14 +0.5
1,659,592 + BPHYT_RS27110 0.14 +0.4
1,659,593 - BPHYT_RS27110 0.14 +1.6
1,659,819 - BPHYT_RS27110 0.35 +0.6
1,659,937 + BPHYT_RS27110 0.45 +0.4

Or see this region's nucleotide sequence