Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18890 and BPHYT_RS18895 are separated by 92 nucleotides BPHYT_RS18895 and BPHYT_RS18900 are separated by 217 nucleotides BPHYT_RS18900 and BPHYT_RS18905 are separated by 201 nucleotides BPHYT_RS18905 and BPHYT_RS18910 are separated by 94 nucleotides
BPHYT_RS18890: BPHYT_RS18890 - flagellar basal body rod protein FlgC, at 4,244,797 to 4,245,222
_RS18890
BPHYT_RS18895: BPHYT_RS18895 - flagellar basal body rod protein FlgB, at 4,245,315 to 4,245,809
_RS18895
BPHYT_RS18900: BPHYT_RS18900 - flagella basal body P-ring formation protein FlgA, at 4,246,027 to 4,247,541
_RS18900
BPHYT_RS18905: BPHYT_RS18905 - anti-sigma-28 factor FlgM, at 4,247,743 to 4,248,096
_RS18905
BPHYT_RS18910: BPHYT_RS18910 - FlgN, at 4,248,191 to 4,248,637
_RS18910
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4245.095 kb on + strand, within BPHYT_RS18890 at 4245.096 kb on - strand, within BPHYT_RS18890 at 4245.289 kb on - strand at 4245.316 kb on + strand at 4245.317 kb on - strand at 4245.317 kb on - strand at 4245.437 kb on + strand, within BPHYT_RS18895 at 4245.437 kb on + strand, within BPHYT_RS18895 at 4245.698 kb on - strand, within BPHYT_RS18895 at 4245.698 kb on - strand, within BPHYT_RS18895 at 4245.809 kb on + strand at 4245.809 kb on + strand at 4245.809 kb on + strand at 4245.809 kb on + strand at 4245.810 kb on - strand at 4245.810 kb on - strand at 4245.810 kb on - strand at 4245.810 kb on - strand at 4245.903 kb on + strand at 4245.903 kb on + strand at 4245.903 kb on + strand at 4245.935 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4245.955 kb on + strand at 4246.290 kb on + strand, within BPHYT_RS18900 at 4246.291 kb on - strand, within BPHYT_RS18900 at 4246.291 kb on - strand, within BPHYT_RS18900 at 4246.291 kb on - strand, within BPHYT_RS18900 at 4246.291 kb on - strand, within BPHYT_RS18900 at 4246.291 kb on - strand, within BPHYT_RS18900 at 4247.051 kb on + strand, within BPHYT_RS18900 at 4247.051 kb on + strand, within BPHYT_RS18900 at 4247.137 kb on + strand, within BPHYT_RS18900 at 4247.137 kb on + strand, within BPHYT_RS18900 at 4247.138 kb on - strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.170 kb on + strand, within BPHYT_RS18900 at 4247.171 kb on - strand, within BPHYT_RS18900 at 4247.171 kb on - strand, within BPHYT_RS18900 at 4247.171 kb on - strand, within BPHYT_RS18900 at 4247.171 kb on - strand, within BPHYT_RS18900 at 4247.171 kb on - strand at 4247.171 kb on - strand, within BPHYT_RS18900 at 4247.173 kb on + strand, within BPHYT_RS18900 at 4247.173 kb on + strand, within BPHYT_RS18900 at 4247.173 kb on + strand, within BPHYT_RS18900 at 4247.173 kb on + strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.174 kb on - strand, within BPHYT_RS18900 at 4247.656 kb on + strand at 4247.656 kb on + strand at 4247.657 kb on - strand at 4247.657 kb on - strand at 4247.657 kb on - strand at 4247.666 kb on + strand at 4247.712 kb on + strand at 4247.714 kb on + strand at 4247.714 kb on + strand at 4247.714 kb on + strand at 4248.111 kb on + strand at 4248.503 kb on - strand, within BPHYT_RS18910 at 4248.539 kb on + strand, within BPHYT_RS18910 at 4248.540 kb on - strand, within BPHYT_RS18910
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,245,095 + BPHYT_RS18890 0.70 -3.0 4,245,096 - BPHYT_RS18890 0.70 -3.4 4,245,289 - -2.1 4,245,316 + -3.7 4,245,317 - +0.0 4,245,317 - +0.1 4,245,437 + BPHYT_RS18895 0.25 -3.4 4,245,437 + BPHYT_RS18895 0.25 -2.5 4,245,698 - BPHYT_RS18895 0.77 -2.4 4,245,698 - BPHYT_RS18895 0.77 -2.4 4,245,809 + -3.6 4,245,809 + -1.8 4,245,809 + -1.3 4,245,809 + -0.4 4,245,810 - +0.4 4,245,810 - -1.7 4,245,810 - -2.0 4,245,810 - -2.5 4,245,903 + -2.9 4,245,903 + -0.7 4,245,903 + -1.9 4,245,935 + -3.2 4,245,955 + -2.9 4,245,955 + -2.7 4,245,955 + +5.0 4,245,955 + -1.3 4,245,955 + -1.3 4,245,955 + -2.7 4,245,955 + -3.1 4,246,290 + BPHYT_RS18900 0.17 -3.2 4,246,291 - BPHYT_RS18900 0.17 -2.8 4,246,291 - BPHYT_RS18900 0.17 -1.2 4,246,291 - BPHYT_RS18900 0.17 -5.5 4,246,291 - BPHYT_RS18900 0.17 -2.2 4,246,291 - BPHYT_RS18900 0.17 -2.2 4,247,051 + BPHYT_RS18900 0.68 -2.6 4,247,051 + BPHYT_RS18900 0.68 -2.6 4,247,137 + BPHYT_RS18900 0.73 -1.9 4,247,137 + BPHYT_RS18900 0.73 -2.1 4,247,138 - BPHYT_RS18900 0.73 -2.4 4,247,170 + BPHYT_RS18900 0.75 -3.6 4,247,170 + BPHYT_RS18900 0.75 -3.0 4,247,170 + BPHYT_RS18900 0.75 -2.7 4,247,170 + BPHYT_RS18900 0.75 -2.2 4,247,170 + BPHYT_RS18900 0.75 -2.2 4,247,170 + BPHYT_RS18900 0.75 -4.8 4,247,171 - BPHYT_RS18900 0.76 -2.1 4,247,171 - BPHYT_RS18900 0.76 -4.0 4,247,171 - BPHYT_RS18900 0.76 -1.7 4,247,171 - BPHYT_RS18900 0.76 +0.9 4,247,171 - +0.7 4,247,171 - BPHYT_RS18900 0.76 -3.1 4,247,173 + BPHYT_RS18900 0.76 -0.5 4,247,173 + BPHYT_RS18900 0.76 -2.5 4,247,173 + BPHYT_RS18900 0.76 -3.8 4,247,173 + BPHYT_RS18900 0.76 -2.6 4,247,174 - BPHYT_RS18900 0.76 -0.2 4,247,174 - BPHYT_RS18900 0.76 +0.3 4,247,174 - BPHYT_RS18900 0.76 -3.7 4,247,174 - BPHYT_RS18900 0.76 -4.6 4,247,174 - BPHYT_RS18900 0.76 -1.3 4,247,174 - BPHYT_RS18900 0.76 -1.8 4,247,174 - BPHYT_RS18900 0.76 -1.3 4,247,174 - BPHYT_RS18900 0.76 -2.4 4,247,656 + -1.2 4,247,656 + +0.2 4,247,657 - +0.0 4,247,657 - -1.4 4,247,657 - -1.6 4,247,666 + +0.5 4,247,712 + +1.1 4,247,714 + +1.0 4,247,714 + -0.1 4,247,714 + -0.1 4,248,111 + -0.0 4,248,503 - BPHYT_RS18910 0.70 -0.3 4,248,539 + BPHYT_RS18910 0.78 -1.5 4,248,540 - BPHYT_RS18910 0.78 -1.3
Or see this region's nucleotide sequence