Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08415 and BPHYT_RS08420 are separated by 136 nucleotides BPHYT_RS08420 and BPHYT_RS08425 are separated by 129 nucleotides BPHYT_RS08425 and BPHYT_RS08430 are separated by 126 nucleotides BPHYT_RS08430 and BPHYT_RS08435 overlap by 4 nucleotides BPHYT_RS08435 and BPHYT_RS08440 are separated by 105 nucleotides
BPHYT_RS08415: BPHYT_RS08415 - hypothetical protein, at 1,928,680 to 1,929,063
_RS08415
BPHYT_RS08420: BPHYT_RS08420 - histidine kinase, at 1,929,200 to 1,929,637
_RS08420
BPHYT_RS08425: BPHYT_RS08425 - hypothetical protein, at 1,929,767 to 1,930,639
_RS08425
BPHYT_RS08430: BPHYT_RS08430 - hypothetical protein, at 1,930,766 to 1,931,074
_RS08430
BPHYT_RS08435: BPHYT_RS08435 - hypothetical protein, at 1,931,071 to 1,931,445
_RS08435
BPHYT_RS08440: BPHYT_RS08440 - hypothetical protein, at 1,931,551 to 1,931,847
_RS08440
Position (kb) 1929
1930
1931 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1928.898 kb on + strand, within BPHYT_RS08415 at 1928.929 kb on + strand, within BPHYT_RS08415 at 1928.948 kb on - strand, within BPHYT_RS08415 at 1929.294 kb on - strand, within BPHYT_RS08420 at 1929.889 kb on + strand, within BPHYT_RS08425 at 1929.928 kb on - strand, within BPHYT_RS08425 at 1930.020 kb on + strand, within BPHYT_RS08425 at 1930.020 kb on + strand, within BPHYT_RS08425 at 1930.021 kb on - strand at 1930.501 kb on + strand, within BPHYT_RS08425 at 1930.501 kb on + strand, within BPHYT_RS08425 at 1931.305 kb on + strand, within BPHYT_RS08435 at 1931.308 kb on + strand, within BPHYT_RS08435 at 1931.447 kb on + strand at 1931.626 kb on - strand, within BPHYT_RS08440
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,928,898 + BPHYT_RS08415 0.57 -1.6 1,928,929 + BPHYT_RS08415 0.65 -1.2 1,928,948 - BPHYT_RS08415 0.70 -0.0 1,929,294 - BPHYT_RS08420 0.21 -0.3 1,929,889 + BPHYT_RS08425 0.14 +1.6 1,929,928 - BPHYT_RS08425 0.18 +1.2 1,930,020 + BPHYT_RS08425 0.29 +0.4 1,930,020 + BPHYT_RS08425 0.29 +1.1 1,930,021 - +2.9 1,930,501 + BPHYT_RS08425 0.84 +0.2 1,930,501 + BPHYT_RS08425 0.84 +4.6 1,931,305 + BPHYT_RS08435 0.62 -1.6 1,931,308 + BPHYT_RS08435 0.63 -1.0 1,931,447 + +0.5 1,931,626 - BPHYT_RS08440 0.25 +1.2
Or see this region's nucleotide sequence